Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 126445866

GI number: 126445866

Start: 42637

End: 43560

Strand: Reverse

Name: nahR [H]

Synonym: BMA10247_A0054

Alternate gene names: 126445866

Gene position: 43560-42637 (Counterclockwise)

Preceding gene: 126447758

Following gene: 126447728

Centisome position: 1.85

GC content: 68.29

Gene sequence:

>924_bases
ATGCCTGACCTCGATCTGAACCTGATTCCGTATCTGGTCGCGCTCAACGAGGCGCGCAACGTGAGCCGCGCGGGCGAGCT
GCTCGGCGTGAGCCAGCCGCGTGTGAGCGCGGCGCTCGGGCGGCTGCGCGAGCACTTCGGCGATCCGCTGTTCGTGCGGA
CCTCGCGCGGCATGGAGCCGACGCCTCGCGCGCTCGCCCTGATTCCGGCCGCGCGCGACGCGCTCGCGAGCATCGAGCGC
GGTCTCGGCGCACCGCACGAGTTCGACCCGGCGAAGAGCGCGCGCACGTTCTCGATCGCGCTGTCCGACGTCGGCGAAAT
CGTGTTCCTGCCGAGGCTGCTGCAAGCGTTCGCGCAACACGCGCCGCATGCGAACCTGCGCTCGGCATCGCTGTCGCACG
CGGAAGTCGCGCACGCGCTCGAGGACGGCGGCGTCGATCTCGCGGTCGGCTACTTTCCGGATCTCGGCGGCACGAACTTC
TTCCAGCAACGGCTTTTCACGCACCGCTTCATCTGCCTGCTGCGGCGCGGCCACCCGCTCGCCGAGCGGCCGCTCACGCT
CGAGCGGTTTCTCGCGTGCGGCCACGCGGTGGTGCGAGCGGAAGGCCGCAGCCAGGAGGTGCTCGAGCAGTATCTGACGA
AGCGGCGCCTCACGCGCCGGGCGGTGCTCGAGACACCGCATTTCATGAGCCTGCCGTTCATCCTGAGCCGCACCGACCTG
ATCGCGACGGTGCCGCATGCGATCGGCTATGCATATGCGGCCGAGCATGCGTCGATCACGCTCGTCGAGCCGCCGCTGCC
TTTGCCTCGCTTCGATCTGAAGCAGCATTGGCATCGCAAGTTCCATAACGATCCGAGCATCACGTGGCTGCGCGGCGTCG
TCGCCCAGCTGTTCAACGATGCGCTCGACGAATGGCCGAAGTGA

Upstream 100 bases:

>100_bases
ATTGATTCGAATAGTGAATCGATTGTCAGCGCTATCCCGACTATGCGGCAATGCAATTTAGGAGATAAGTTGTATACGGA
TATCCAATAGTAGTGACGTG

Downstream 100 bases:

>100_bases
CGGCGAACGGCGGCCGCGCACGACGCATGGGGCAACGCGCGGCCGCCGTTCGCAAAGCGAGTCACGGCGCACGCTCGCGA
CGAAAGCATGAAACAATGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIER
GLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNF
FQQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTDL
IATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK

Sequences:

>Translated_307_residues
MPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIER
GLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNF
FQQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTDL
IATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK
>Mature_306_residues
PDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIERG
LGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNFF
QQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTDLI
ATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=290, Percent_Identity=27.5862068965517, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790147, Length=308, Percent_Identity=25, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081766, Length=299, Percent_Identity=24.7491638795987, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786820, Length=306, Percent_Identity=21.5686274509804, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34216; Mature: 34085

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
TPRALALIPAARDALASIERGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQH
CCHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
APHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNFFQQRLFTHRFICLLRRGHPL
CCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
AERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTDL
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH
IATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFND
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ALDEWPK
HHHHCCC
>Mature Secondary Structure 
PDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
TPRALALIPAARDALASIERGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQH
CCHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
APHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNFFQQRLFTHRFICLLRRGHPL
CCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
AERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTDL
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH
IATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFND
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ALDEWPK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]