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The map label for this gene is cefD [H]

Identifier: 126445591

GI number: 126445591

Start: 1667496

End: 1668653

Strand: Reverse

Name: cefD [H]

Synonym: BMA10247_A1739

Alternate gene names: 126445591

Gene position: 1668653-1667496 (Counterclockwise)

Preceding gene: 126446310

Following gene: 126447013

Centisome position: 70.93

GC content: 66.93

Gene sequence:

>1158_bases
ATGACAGCCCCACTGAAATCGTTGTTTCTTCTCGACCCGAGCGTGACCTATCTGAACCACGGCGCGTACGGCGCGACGCC
GCGCCCGGTGTTCGAGCGCCACGTGCAGTGGCAGTACGAGCTCGAACGCGAGCCGGTCGATTTCCTGTCGCGCCGCTTCG
CCGAACGCATGGCGCAGGCGAGGGCGATACTGGCCGAATACGTGGATACCGAACGCGACAATCTAGTATATGTGAGCAAC
GGCACCACGGGCGTGAACATCGTCGCGCGCAGCCTCCCGCTCGGCCCGGGCGACGAACTGCTCACCACCGATCACGAGCA
CGGCGGCATCGAGCGGCTGTGGCGCTTCACCGCGCAAAAGCGCGGGTTCGAGATCGTCCGGCACAAGGTGTCGCTGCCGG
TGACGACGCATGCCCGGTTCGTCGAGGATTTCTGGCGCGACGTGACGCCGCGCACGCGCGCGATCCTGATCAGCCAGCTG
ACGTCGCCCACCGCGCTCGTGTTTCCGGTTGCGGCGATCTGCGCGCGCGCGCGGGCGCGCGGCATCCTGACGATCGTCGA
CGGCTCGCACGTGCCCGGGCAACTGCCGCTGTCGCTGCGCGAGATGGATCCGGATTTTTATGTCGGCATCCTGCATAAAT
GGGTGTGCGCGCCGAAGGGCAGCGCGTTCCTGTATGCGAGGCCGGACGTGCAGCCGCTTGTCGAGCCGCTCGTCGTTAGT
TGGGGCTGGGAGCCGAAGAACCCGGGGCCGTCGAAGTTCGTCGAGTATCACGAGTGGCAGGGCAGCCGCGACATCTCCGC
GTTCCTGAGCGTGCCGAGCGCGATCGCGTTTCAGCGCGAGCACGACTGGGACGGCGTGCGCAAGCGCTGCATCGCGCTCG
CGAGCGACGCGCAGCGCGAAGTGGCCGCGTTGACGCGCGAGCCGCTCTACCATCCGCCGGGCGCGCACGAGTGGCACGGC
CAGATGGTCTGCGCGCAACTGCCGCCGCAGACGGACGACATCGCGCTGCTTGCCCGCTTGCGCAACGAATGCGGGATCGA
CGTCTCGGTCGACCGTTTCGGCGGCCGGCCTCGCATCCGAGTGTCGATTCAGGGCTATAACGGCCCGGACGACGTCGATC
GATTGCTCGGCAGTCTGAAGCAACTGCTGCGGCTTTGA

Upstream 100 bases:

>100_bases
CGCGCCGCGAGGCCGGGGCCGCCCCGGCGCCACGCGCTTGCGAGGCGGCGAGCCTCAGCCGCCAGATTGCCGACCGGATT
CTCGAGCATCGGACAAGGCC

Downstream 100 bases:

>100_bases
AGGATTGGCGAATTGCACCTGTAGCTTAATCGGACAATGGGGCCGAACGTGAAGCGGGAGTACGCCGGGCGATACCCGTC
TGCAGCTTTCCAGGGCGTCA

Product: putative isopenicillin N epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTAPLKSLFLLDPSVTYLNHGAYGATPRPVFERHVQWQYELEREPVDFLSRRFAERMAQARAILAEYVDTERDNLVYVSN
GTTGVNIVARSLPLGPGDELLTTDHEHGGIERLWRFTAQKRGFEIVRHKVSLPVTTHARFVEDFWRDVTPRTRAILISQL
TSPTALVFPVAAICARARARGILTIVDGSHVPGQLPLSLREMDPDFYVGILHKWVCAPKGSAFLYARPDVQPLVEPLVVS
WGWEPKNPGPSKFVEYHEWQGSRDISAFLSVPSAIAFQREHDWDGVRKRCIALASDAQREVAALTREPLYHPPGAHEWHG
QMVCAQLPPQTDDIALLARLRNECGIDVSVDRFGGRPRIRVSIQGYNGPDDVDRLLGSLKQLLRL

Sequences:

>Translated_385_residues
MTAPLKSLFLLDPSVTYLNHGAYGATPRPVFERHVQWQYELEREPVDFLSRRFAERMAQARAILAEYVDTERDNLVYVSN
GTTGVNIVARSLPLGPGDELLTTDHEHGGIERLWRFTAQKRGFEIVRHKVSLPVTTHARFVEDFWRDVTPRTRAILISQL
TSPTALVFPVAAICARARARGILTIVDGSHVPGQLPLSLREMDPDFYVGILHKWVCAPKGSAFLYARPDVQPLVEPLVVS
WGWEPKNPGPSKFVEYHEWQGSRDISAFLSVPSAIAFQREHDWDGVRKRCIALASDAQREVAALTREPLYHPPGAHEWHG
QMVCAQLPPQTDDIALLARLRNECGIDVSVDRFGGRPRIRVSIQGYNGPDDVDRLLGSLKQLLRL
>Mature_384_residues
TAPLKSLFLLDPSVTYLNHGAYGATPRPVFERHVQWQYELEREPVDFLSRRFAERMAQARAILAEYVDTERDNLVYVSNG
TTGVNIVARSLPLGPGDELLTTDHEHGGIERLWRFTAQKRGFEIVRHKVSLPVTTHARFVEDFWRDVTPRTRAILISQLT
SPTALVFPVAAICARARARGILTIVDGSHVPGQLPLSLREMDPDFYVGILHKWVCAPKGSAFLYARPDVQPLVEPLVVSW
GWEPKNPGPSKFVEYHEWQGSRDISAFLSVPSAIAFQREHDWDGVRKRCIALASDAQREVAALTREPLYHPPGAHEWHGQ
MVCAQLPPQTDDIALLARLRNECGIDVSVDRFGGRPRIRVSIQGYNGPDDVDRLLGSLKQLLRL

Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789175, Length=406, Percent_Identity=23.8916256157635, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =5.1.1.17 [H]

Molecular weight: Translated: 43357; Mature: 43226

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPLKSLFLLDPSVTYLNHGAYGATPRPVFERHVQWQYELEREPVDFLSRRFAERMAQA
CCCCCCHHEEECCCHHEEECCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
RAILAEYVDTERDNLVYVSNGTTGVNIVARSLPLGPGDELLTTDHEHGGIERLWRFTAQK
HHHHHHHHCCCCCCEEEEECCCCCEEHEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHH
RGFEIVRHKVSLPVTTHARFVEDFWRDVTPRTRAILISQLTSPTALVFPVAAICARARAR
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GILTIVDGSHVPGQLPLSLREMDPDFYVGILHKWVCAPKGSAFLYARPDVQPLVEPLVVS
CEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHC
WGWEPKNPGPSKFVEYHEWQGSRDISAFLSVPSAIAFQREHDWDGVRKRCIALASDAQRE
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VAALTREPLYHPPGAHEWHGQMVCAQLPPQTDDIALLARLRNECGIDVSVDRFGGRPRIR
HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEHHCCCCCCEEE
VSIQGYNGPDDVDRLLGSLKQLLRL
EEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAPLKSLFLLDPSVTYLNHGAYGATPRPVFERHVQWQYELEREPVDFLSRRFAERMAQA
CCCCCHHEEECCCHHEEECCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
RAILAEYVDTERDNLVYVSNGTTGVNIVARSLPLGPGDELLTTDHEHGGIERLWRFTAQK
HHHHHHHHCCCCCCEEEEECCCCCEEHEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHH
RGFEIVRHKVSLPVTTHARFVEDFWRDVTPRTRAILISQLTSPTALVFPVAAICARARAR
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GILTIVDGSHVPGQLPLSLREMDPDFYVGILHKWVCAPKGSAFLYARPDVQPLVEPLVVS
CEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHC
WGWEPKNPGPSKFVEYHEWQGSRDISAFLSVPSAIAFQREHDWDGVRKRCIALASDAQRE
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VAALTREPLYHPPGAHEWHGQMVCAQLPPQTDDIALLARLRNECGIDVSVDRFGGRPRIR
HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEHHCCCCCCEEE
VSIQGYNGPDDVDRLLGSLKQLLRL
EEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8437592 [H]