| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is glnD [H]
Identifier: 126455366
GI number: 126455366
Start: 2447618
End: 2450194
Strand: Direct
Name: glnD [H]
Synonym: BURPS1106A_2496
Alternate gene names: 126455366
Gene position: 2447618-2450194 (Clockwise)
Preceding gene: 126454210
Following gene: 126451482
Centisome position: 61.37
GC content: 68.41
Gene sequence:
>2577_bases ATGAGCGCATCCGTCGCCGAGCCGCCTCCCGCGCTGTCGCGCAAAGCCGAATTCAAGGCCGCGAAGGCCGAGCTGCTCGC GCGCTTCAAGAGCGCGAACCACGTCACGCCGCTGATGCACGCGCTGTCGCGCGCGACCGACGACGCGCTGCGCAGCCTGT GGCAGGAATGCGGGCTGCCCGCGACGCTCGCGCTCGTCGCGGTCGGCGGCTTCGGGCGCGGCGAGCTGTCGCCGCACTCG GACGTCGACATCCTCGTGCTGCTGCCCGATGCGCACGCGAGCGAGCTCGACGAGCGCATCGAGCGCTTCATCGGCATGGC GTGGGATCTCGGGCTCGAGATCGGCAGCAGCGTGCGCACGGTCGACCAGTGCATCGAGGAAGCATCGCACGACGTGACCG TGCAGACGTCGCTGCTCGAGGCGCGTCGCATCGTCGGCAGCACGGCGCTCTTCGAGCGCTTCATGTTGCGCTACCGCGAG GCGCTCGACGCGCGCGCGTTCTTCCAGGCGAAGGTGCTCGAAATGCGCCAGCGCCACGCGAAGTTCCAGGACACGCCGTA CAGCCTCGAGCCGAACGTGAAGGAAAGCCCCGGCGGCCTGCGCGATCTGCAGACAATCCTCTGGATCGCGCGCGCGGCGG GCTTCGGCAGCAGCTGGCGCGAGCTCGACACGCGCGGGCTCATCACCGATCGCGAAGCGCGCGAGCTGCGCCGCAACGAA GGCTTCCTGAAAACGCTGCGCGCGCGGCTGCACGTGATCGCCGGGCGGCGCCAGGACATCCTCGTGTTCGATCTGCAGAC GCAGGCGGCCGAGAGCTTCGGCTACCAGCCGACGTCCGCGAAGCGCGCGAGCGAGCAGCTGATGCGGCGTTACTACTGGG CCGCGAAGGCGGTCACGCAGCTCGCGACGATCCTGATCCAGAACATCGAGGCGCAGCTCTTCCCGGCAACGAGCGGCGTC ACGCGCGTGCTGTCGCCCGGGCGCTTCGTCGAGAAGCAGGGCATGCTCGAGATCGCCGCGGACGACGTGTTCGAGCGCCA CCCGGACGCGATCCTCGAAGCGTTCCTGCTGTACGAGGCGACGCGCGGCGTGAAGGGCCTGTCCGCACGCACGCTGCGCG CGCTCTACAACTCGCGCGACGTGATGAACAACGCGTGGCGGCGCGATCCGCGCAACCGCCGTACGTTCATGCAGATCCTG CAGCAGCCGGAAGGCATCACGCACGCGTTCCGGCTGATGAACCAGACGAGCGTGCTCGGCCGCTATCTGCTGAACTTCCG GCGAATCGTCGGCCAGATGCAGCACGACCTGTACCACGTGTACACGGTCGATCAGCATATCCTGATGGTGCTGCGCAACA TCCGCCGCTTCGCGGTGGCCGAGCACGCGCACGAATATCCGTTCTGCAGCCAGCTGATCGTGAATTTCGAGCGGCCCTGG GTGCTGTACGTCGCCGCCCTCTTCCACGACATCGCGAAAGGCCGCGGCGGCGATCACTCGGCGCTCGGGATGGCCGACGC GCGGCGATTCTGCCGAGAGCACGGGATCGAGGGCGACGACGCGGCGCTCGTCGTCTGGCTCGTCCAGCATCACCTGACGA TGAGCCAGGTCGCGCAGAAGCAGGATACGAGCGACCCGGTGGTGATCAAGCGCTTCGCGGAGCTCGTGGGCAGCGAGCGG CGGCTGACCGCGCTCTATCTGCTGACCGTCGCCGATATTCGCGGCACGAGCCCGAAGGTGTGGAACACGTGGAAAGGCAA GCTGCTCGAGGATCTGTATCGCGCGACGCTCGCCGTGCTGGGCGGCGCGCAGCCCGACGCGCATTCGGAGCTGAAGACGC GCCAGGAAGAGGCGCTCGCGCTGCTGCGCCTGGAAACCGTGCCGCCCGACGCGCACCGCGCGCTGTGGGACCAGCTCGAC GTCGGTTACTTCCTGCGCCACGATGCGGCCGACATCGCGTGGCAGACCCGCGTGCTGTACCGCCACGTCGCGGCCGATAC CGCGATCGTCCGCGCGCGGCCGTCGCCCGTCGGCGACGCGCTGCAAGTGCTCGTCTACGTGAAGGACCGCTCGGACCTGT TCGCGGGCATCTGCGCGTACTTCGACCGCAACGGGCTGTCGGTGCTCGACGCACGCGTGAACACGACGCGCCACGGCTAT GCGCTCGACAATTTCATCGTCACGCAGACCGAGCACGACGTGCAATATCGCGACATCGCGAACCTCGTCGAGCAGCAGCT CGCCGCACGCCTCGCCGAATCGGCGCCGCTGCCCGAGCCGTCGAAGGGGCGGCTCTCGCGGCTGTCGCGCACGTTCCCGA TCACGCCGCGCGTCGACCTGCGGGCCGACGAGCGCGGCCAGTACTACATTCTGTCCGTGTCGGCGAACGACCGGCCGGGC CTTCTTTATTCGATCGCGCGCGTGCTGGCCGAGCACCGGGTCGGCGTCCACGCGGCGCGGATCAATACGCTCGGCGAACG CGTCGAGGACGTCTTCATGCTCGACGGCACCGGCTTGTCCGACAACCGTCTGCAGATCCAAGTCGAAACCGAGCTGCTGC GCGCGATCGCAGTGTGA
Upstream 100 bases:
>100_bases GCTCGCCCCGCCTGAGCGGCGCGAGCCCGCACCAATTTAGCCAGGTAGCCGCTCGCGCAGCCGCGCGCGGCCGTTCAACC GCCCAATTCGATCGCCGCCC
Downstream 100 bases:
>100_bases GTATTCCAGCGTTTATGCGCACAAAATTGACCGTCAAGAATCCGCGCCCGGCGACGCCCGGCCGCGCCCCCGTCCGCTCC GGCAGCCTCACCGCGCGCAA
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 858; Mature: 857
Protein sequence:
>858_residues MSASVAEPPPALSRKAEFKAAKAELLARFKSANHVTPLMHALSRATDDALRSLWQECGLPATLALVAVGGFGRGELSPHS DVDILVLLPDAHASELDERIERFIGMAWDLGLEIGSSVRTVDQCIEEASHDVTVQTSLLEARRIVGSTALFERFMLRYRE ALDARAFFQAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE GFLKTLRARLHVIAGRRQDILVFDLQTQAAESFGYQPTSAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGV TRVLSPGRFVEKQGMLEIAADDVFERHPDAILEAFLLYEATRGVKGLSARTLRALYNSRDVMNNAWRRDPRNRRTFMQIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIVNFERPW VLYVAALFHDIAKGRGGDHSALGMADARRFCREHGIEGDDAALVVWLVQHHLTMSQVAQKQDTSDPVVIKRFAELVGSER RLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATLAVLGGAQPDAHSELKTRQEEALALLRLETVPPDAHRALWDQLD VGYFLRHDAADIAWQTRVLYRHVAADTAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARVNTTRHGY ALDNFIVTQTEHDVQYRDIANLVEQQLAARLAESAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVETELLRAIAV
Sequences:
>Translated_858_residues MSASVAEPPPALSRKAEFKAAKAELLARFKSANHVTPLMHALSRATDDALRSLWQECGLPATLALVAVGGFGRGELSPHS DVDILVLLPDAHASELDERIERFIGMAWDLGLEIGSSVRTVDQCIEEASHDVTVQTSLLEARRIVGSTALFERFMLRYRE ALDARAFFQAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE GFLKTLRARLHVIAGRRQDILVFDLQTQAAESFGYQPTSAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGV TRVLSPGRFVEKQGMLEIAADDVFERHPDAILEAFLLYEATRGVKGLSARTLRALYNSRDVMNNAWRRDPRNRRTFMQIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIVNFERPW VLYVAALFHDIAKGRGGDHSALGMADARRFCREHGIEGDDAALVVWLVQHHLTMSQVAQKQDTSDPVVIKRFAELVGSER RLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATLAVLGGAQPDAHSELKTRQEEALALLRLETVPPDAHRALWDQLD VGYFLRHDAADIAWQTRVLYRHVAADTAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARVNTTRHGY ALDNFIVTQTEHDVQYRDIANLVEQQLAARLAESAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVETELLRAIAV >Mature_857_residues SASVAEPPPALSRKAEFKAAKAELLARFKSANHVTPLMHALSRATDDALRSLWQECGLPATLALVAVGGFGRGELSPHSD VDILVLLPDAHASELDERIERFIGMAWDLGLEIGSSVRTVDQCIEEASHDVTVQTSLLEARRIVGSTALFERFMLRYREA LDARAFFQAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNEG FLKTLRARLHVIAGRRQDILVFDLQTQAAESFGYQPTSAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGVT RVLSPGRFVEKQGMLEIAADDVFERHPDAILEAFLLYEATRGVKGLSARTLRALYNSRDVMNNAWRRDPRNRRTFMQILQ QPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIVNFERPWV LYVAALFHDIAKGRGGDHSALGMADARRFCREHGIEGDDAALVVWLVQHHLTMSQVAQKQDTSDPVVIKRFAELVGSERR LTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATLAVLGGAQPDAHSELKTRQEEALALLRLETVPPDAHRALWDQLDV GYFLRHDAADIAWQTRVLYRHVAADTAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARVNTTRHGYA LDNFIVTQTEHDVQYRDIANLVEQQLAARLAESAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPGL LYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLSDNRLQIQVETELLRAIAV
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=842, Percent_Identity=35.9857482185273, Blast_Score=501, Evalue=1e-143,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 96770; Mature: 96639
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASVAEPPPALSRKAEFKAAKAELLARFKSANHVTPLMHALSRATDDALRSLWQECGLP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC ATLALVAVGGFGRGELSPHSDVDILVLLPDAHASELDERIERFIGMAWDLGLEIGSSVRT HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH VDQCIEEASHDVTVQTSLLEARRIVGSTALFERFMLRYREALDARAFFQAKVLEMRQRHA HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCC GFLKTLRARLHVIAGRRQDILVFDLQTQAAESFGYQPTSAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGVTRVLSPGRFVEKQGMLEIAADDVFERHPDAILEAFLLYEA HHHHHHHHHHHHEECCCCCHHHHCCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSRDVMNNAWRRDPRNRRTFMQILQQPEGITHAFRLMNQTSVLG HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIVNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCH VLYVAALFHDIAKGRGGDHSALGMADARRFCREHGIEGDDAALVVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPVVIKRFAELVGSERRLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATLAVL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGAQPDAHSELKTRQEEALALLRLETVPPDAHRALWDQLDVGYFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH RHVAADTAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARVNTTRHGY HHHHHHHHEEEECCCCHHHHHEEEEEEECCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCE ALDNFIVTQTEHDVQYRDIANLVEQQLAARLAESAPLPEPSKGRLSRLSRTFPITPRVDL EECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCC DNRLQIQVETELLRAIAV CCEEEEEEHHHHHHHHCC >Mature Secondary Structure SASVAEPPPALSRKAEFKAAKAELLARFKSANHVTPLMHALSRATDDALRSLWQECGLP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC ATLALVAVGGFGRGELSPHSDVDILVLLPDAHASELDERIERFIGMAWDLGLEIGSSVRT HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH VDQCIEEASHDVTVQTSLLEARRIVGSTALFERFMLRYREALDARAFFQAKVLEMRQRHA HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCC GFLKTLRARLHVIAGRRQDILVFDLQTQAAESFGYQPTSAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGVTRVLSPGRFVEKQGMLEIAADDVFERHPDAILEAFLLYEA HHHHHHHHHHHHEECCCCCHHHHCCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSRDVMNNAWRRDPRNRRTFMQILQQPEGITHAFRLMNQTSVLG HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIVNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCH VLYVAALFHDIAKGRGGDHSALGMADARRFCREHGIEGDDAALVVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPVVIKRFAELVGSERRLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATLAVL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGAQPDAHSELKTRQEEALALLRLETVPPDAHRALWDQLDVGYFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH RHVAADTAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARVNTTRHGY HHHHHHHHEEEECCCCHHHHHEEEEEEECCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCE ALDNFIVTQTEHDVQYRDIANLVEQQLAARLAESAPLPEPSKGRLSRLSRTFPITPRVDL EECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFMLDGTGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCC DNRLQIQVETELLRAIAV CCEEEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA