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The map label for this gene is rfbB [H]

Identifier: 126455338

GI number: 126455338

Start: 3058325

End: 3059722

Strand: Reverse

Name: rfbB [H]

Synonym: BURPS1106A_3136

Alternate gene names: 126455338

Gene position: 3059722-3058325 (Counterclockwise)

Preceding gene: 126455168

Following gene: 126454457

Centisome position: 76.71

GC content: 59.23

Gene sequence:

>1398_bases
TTGCCGGCAATCAGCGTCCAAGACGTCAGCAAGCGCTTTCGCGTATTTGCCAAGCCGGCAGACCGTCTGAAGGCCGCAGT
TCGGCATCGCATCGGCGGTCTCGCGAAGTTGGTGCCTGCTCGTTTGCTCGGAACGGAAGGTGCAAGCGAGTTTCATGCGC
TGCAGCATGTGTCGTTTCACGTACAAAAGGGCGAGACGATCGGAATCATCGGCCGCAACGGCTCGGGAAAGTCGACGTTG
TTGCAGATCATCTGCGGGACGCTCACGCCGTCGGGTGGCCGGGTTGCGATCAACGGGCGCGTCGCCGCGCTGCTCGAACT
CGGAGCGGGCTTCAATCCGGAGTTCACTGGCCGCGAAAACGTATACATGAACGCGGCGTTGCTGGGCCTCTCGAAAGCAC
AGATCGAGGAGCGGCTCGACGCCATCTTCGCTTTTGCCGATATTGGCGGCTTCGTGGATCAACCGGTGAAGACCTATTCG
AGCGGCATGTACGTGCGGCTTGCTTTTGCCGTCATTGCGCACGTCGACGCCGACGTGCTCGTGATCGACGAAGCGTTGGC
CGTCGGGGACGCATTCTTCACGCAAAAGTGCATGCGTTTTCTGCGCGCGTTCATGGAGCGGGGCACCGTTTTATTTGTCA
GCCACGATACGAACGCGGTGGTCAATCTCTGTACCCGCGTCGTATGGCTTGACAAGGGGCGCGTTCGCGAAATCGGTCCG
GCAAAGGACGTTTGCGACTCGTATCTTGAGGCTTTCTACGAGGAGCAGCATCGCGCATCGGGGCGAAGCGTTCGCGCGCT
TGAGCGCAGCAGTGTCGTGCGCGCAATAGCCGAAGGCGATATGCGCGACCAGCGCGCATTGCTCATCAACGCGTCGAAGC
TGCGCAACGACGTGGAGTTGTTCCAGTTCACTGCCGACGCGAAGAATTTCGGTCTTGGCGGCGCATCGATTGAGCATGTC
GGCATCGAGGATGGCACGGGGGCGCCGCTGAATTGGGTAGTGGGGGGCGAGATCGTTTGCATCCGCATCGCCGTCAAAGC
CCTGCAGAACCTGGAGCGTGCCATCGTCGGATTCATTGTCCGGGATCGGCTCGGGCAAAATCTGTTTGGCGACAACACGT
ATCTCACGACCCTCAACGAGCCGTTCGCTGTCGCGGCGGGCGAAAGTTTTTCGGTCCGATTCGGGTTCAGAATGCCGGTC
TTGCCGGTAGGCGATTATTCGGTGACGGTTGCAGTCGCCGACGGTTCACAAAGCGACCACGTGATCCACCAATGGCTGCA
CGATGCGGTGTTGTTGAAGTCGCATTCGACGAGTGTCAGTACAGGATTAATAGGTATTCCAATGCATGAGATCGTGCTTG
AGCGGGATACGCTGAACGAAGTTGGGGCGGCGCAATGA

Upstream 100 bases:

>100_bases
CATCCGCTCGGCCTCGCGTTTTTGGGGGGCGTGGCCGTTGCGTGCGCGGGCTTCAAGTATTTTCAGTTAATGCGCAAGGG
GTTTGCCGATGTCCTCTGAA

Downstream 100 bases:

>100_bases
AATCTGAAATACCTGTCACCGTTCCGGATCGATTCGATGCCGCCGACGTGCTGGGGGCGCCACAGCCCGCCCGCGTCGCG
GATCCGTCGACACTTGCGAA

Product: putative lipopolysaccharide ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MPAISVQDVSKRFRVFAKPADRLKAAVRHRIGGLAKLVPARLLGTEGASEFHALQHVSFHVQKGETIGIIGRNGSGKSTL
LQIICGTLTPSGGRVAINGRVAALLELGAGFNPEFTGRENVYMNAALLGLSKAQIEERLDAIFAFADIGGFVDQPVKTYS
SGMYVRLAFAVIAHVDADVLVIDEALAVGDAFFTQKCMRFLRAFMERGTVLFVSHDTNAVVNLCTRVVWLDKGRVREIGP
AKDVCDSYLEAFYEEQHRASGRSVRALERSSVVRAIAEGDMRDQRALLINASKLRNDVELFQFTADAKNFGLGGASIEHV
GIEDGTGAPLNWVVGGEIVCIRIAVKALQNLERAIVGFIVRDRLGQNLFGDNTYLTTLNEPFAVAAGESFSVRFGFRMPV
LPVGDYSVTVAVADGSQSDHVIHQWLHDAVLLKSHSTSVSTGLIGIPMHEIVLERDTLNEVGAAQ

Sequences:

>Translated_465_residues
MPAISVQDVSKRFRVFAKPADRLKAAVRHRIGGLAKLVPARLLGTEGASEFHALQHVSFHVQKGETIGIIGRNGSGKSTL
LQIICGTLTPSGGRVAINGRVAALLELGAGFNPEFTGRENVYMNAALLGLSKAQIEERLDAIFAFADIGGFVDQPVKTYS
SGMYVRLAFAVIAHVDADVLVIDEALAVGDAFFTQKCMRFLRAFMERGTVLFVSHDTNAVVNLCTRVVWLDKGRVREIGP
AKDVCDSYLEAFYEEQHRASGRSVRALERSSVVRAIAEGDMRDQRALLINASKLRNDVELFQFTADAKNFGLGGASIEHV
GIEDGTGAPLNWVVGGEIVCIRIAVKALQNLERAIVGFIVRDRLGQNLFGDNTYLTTLNEPFAVAAGESFSVRFGFRMPV
LPVGDYSVTVAVADGSQSDHVIHQWLHDAVLLKSHSTSVSTGLIGIPMHEIVLERDTLNEVGAAQ
>Mature_464_residues
PAISVQDVSKRFRVFAKPADRLKAAVRHRIGGLAKLVPARLLGTEGASEFHALQHVSFHVQKGETIGIIGRNGSGKSTLL
QIICGTLTPSGGRVAINGRVAALLELGAGFNPEFTGRENVYMNAALLGLSKAQIEERLDAIFAFADIGGFVDQPVKTYSS
GMYVRLAFAVIAHVDADVLVIDEALAVGDAFFTQKCMRFLRAFMERGTVLFVSHDTNAVVNLCTRVVWLDKGRVREIGPA
KDVCDSYLEAFYEEQHRASGRSVRALERSSVVRAIAEGDMRDQRALLINASKLRNDVELFQFTADAKNFGLGGASIEHVG
IEDGTGAPLNWVVGGEIVCIRIAVKALQNLERAIVGFIVRDRLGQNLFGDNTYLTTLNEPFAVAAGESFSVRFGFRMPVL
PVGDYSVTVAVADGSQSDHVIHQWLHDAVLLKSHSTSVSTGLIGIPMHEIVLERDTLNEVGAAQ

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=297, Percent_Identity=24.9158249158249, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI27477115, Length=294, Percent_Identity=25.8503401360544, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI6005701, Length=291, Percent_Identity=26.1168384879725, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=27.1356783919598, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=24.8847926267281, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=24.8847926267281, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI31657092, Length=219, Percent_Identity=24.6575342465753, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI45446740, Length=276, Percent_Identity=24.6376811594203, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI47078218, Length=256, Percent_Identity=24.21875, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=283, Percent_Identity=21.2014134275618, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=283, Percent_Identity=21.2014134275618, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI25914749, Length=204, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=25.615763546798, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=28.2407407407407, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081791, Length=205, Percent_Identity=23.9024390243902, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081782, Length=267, Percent_Identity=24.3445692883895, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=27.0531400966184, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=25.8373205741627, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=25.7383966244726, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=26.2910798122066, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789032, Length=271, Percent_Identity=22.8782287822878, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082267, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=24.5, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=25.7918552036199, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=30.952380952381, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786981, Length=229, Percent_Identity=26.6375545851528, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=212, Percent_Identity=23.1132075471698, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787029, Length=204, Percent_Identity=25.4901960784314, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786319, Length=198, Percent_Identity=25.7575757575758, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1789751, Length=190, Percent_Identity=28.4210526315789, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787712, Length=212, Percent_Identity=26.4150943396226, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788450, Length=268, Percent_Identity=25, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=295, Percent_Identity=24.7457627118644, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=331, Percent_Identity=24.1691842900302, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=295, Percent_Identity=22.7118644067797, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=185, Percent_Identity=25.4054054054054, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=185, Percent_Identity=25.4054054054054, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62484234, Length=260, Percent_Identity=24.2307692307692, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 50371; Mature: 50240

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAISVQDVSKRFRVFAKPADRLKAAVRHRIGGLAKLVPARLLGTEGASEFHALQHVSFH
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHEEE
VQKGETIGIIGRNGSGKSTLLQIICGTLTPSGGRVAINGRVAALLELGAGFNPEFTGREN
EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHEEEHHHCCCCCCCCCCCCC
VYMNAALLGLSKAQIEERLDAIFAFADIGGFVDQPVKTYSSGMYVRLAFAVIAHVDADVL
EEEEHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHHCCCCEE
VIDEALAVGDAFFTQKCMRFLRAFMERGTVLFVSHDTNAVVNLCTRVVWLDKGRVREIGP
EEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHEECCCCCCCCCC
AKDVCDSYLEAFYEEQHRASGRSVRALERSSVVRAIAEGDMRDQRALLINASKLRNDVEL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCHHH
FQFTADAKNFGLGGASIEHVGIEDGTGAPLNWVVGGEIVCIRIAVKALQNLERAIVGFIV
EEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
RDRLGQNLFGDNTYLTTLNEPFAVAAGESFSVRFGFRMPVLPVGDYSVTVAVADGSQSDH
HHHHCCCCCCCCCEEEECCCCEEEECCCCEEEEEECCCCEEECCCCEEEEEEECCCCCHH
VIHQWLHDAVLLKSHSTSVSTGLIGIPMHEIVLERDTLNEVGAAQ
HHHHHHHHHHHEECCCCCCCCCEEECCHHHHHCCHHHHHHCCCCC
>Mature Secondary Structure 
PAISVQDVSKRFRVFAKPADRLKAAVRHRIGGLAKLVPARLLGTEGASEFHALQHVSFH
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHEEE
VQKGETIGIIGRNGSGKSTLLQIICGTLTPSGGRVAINGRVAALLELGAGFNPEFTGREN
EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHEEEHHHCCCCCCCCCCCCC
VYMNAALLGLSKAQIEERLDAIFAFADIGGFVDQPVKTYSSGMYVRLAFAVIAHVDADVL
EEEEHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHCCCHHHHHHHHHHHHCCCCEE
VIDEALAVGDAFFTQKCMRFLRAFMERGTVLFVSHDTNAVVNLCTRVVWLDKGRVREIGP
EEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHEECCCCCCCCCC
AKDVCDSYLEAFYEEQHRASGRSVRALERSSVVRAIAEGDMRDQRALLINASKLRNDVEL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCHHH
FQFTADAKNFGLGGASIEHVGIEDGTGAPLNWVVGGEIVCIRIAVKALQNLERAIVGFIV
EEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
RDRLGQNLFGDNTYLTTLNEPFAVAAGESFSVRFGFRMPVLPVGDYSVTVAVADGSQSDH
HHHHCCCCCCCCCEEEECCCCEEEECCCCEEEEEECCCCEEECCCCEEEEEEECCCCCHH
VIHQWLHDAVLLKSHSTSVSTGLIGIPMHEIVLERDTLNEVGAAQ
HHHHHHHHHHHEECCCCCCCCCEEECCHHHHHCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]