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The map label for this gene is secF [H]

Identifier: 126455336

GI number: 126455336

Start: 3286255

End: 3287205

Strand: Direct

Name: secF [H]

Synonym: BURPS1106A_3365

Alternate gene names: 126455336

Gene position: 3286255-3287205 (Clockwise)

Preceding gene: 126454226

Following gene: 126455249

Centisome position: 82.39

GC content: 63.51

Gene sequence:

>951_bases
ATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGTTGGTCTTCAACGTGGTCTCGCTCGTGACGTT
CCTCGCCGCCGTGTTCTTCCTGTTCCATCGCGGGCTGCATCTGTCCGTCGAATTCACGGGCGGCACCGTGATCGAAGTGC
AGTACCAGCAGGCCGCGCAGCTCGAACCCGTGCGCGCGACGCTCGGCACGCTCGGCTACGCCGACGCGCAGGTGCAGAAC
TTCGGCACGTCGCGCAACGTGCTGATTCGCCTGCCGCTCAAGCAGGGCCTCACGTCCGCGCAGCAGAGCGACCAGGTGAT
GGCCGCGCTGAAGGCGCAGAACGCCGACGTCGCGCTGCAGCGCGTCGAGTTCGTCGGCCCGCAGGTCGGCCGCGAGCTCG
CGACCGACGGCCTGCTCGCGCTCGCGTGCGTCGTGATCGGCATCGTCATCTATCTGTCGTTCCGCTTCGAATGGAAGTAC
GCGGTCGCCGGCATCATCGCGAACCTGCACGACGTCGTGATCATTCTCGGCTTCTTCGCGTTCTTCCAGTGGGAGTTCTC
GCTGTCGGTGCTGGCGGCGGTGCTCGCGGTGCTCGGCTACTCGGTCAACGAATCGGTCGTCATCTTCGACCGGATCCGCG
AGACGTTCCGCCGCGAGCGCAAGATGACGGTGCAGGAAGTGATCAACCATGCGATCACGAGCACGATGTCGCGCACGATC
ATCACGCACACGTCGACGGAAATGATGGTGCTGTCGATGTTCTTCTTCGGCGGCCCGACGCTGCACTACTTCGCGCTCGC
GCTGACGGTCGGCATCATGTTCGGCATCTATTCGTCGGTGTTCGTCGCCGGCTCGCTCGCGATGTGGCTCGGCATCAAAC
GCGAGGATCTCGTCAAGGAGAAGAAGTCCGCGCACGATCCGAACGATCCGAACGCGGGCGCGCAGGTGTAA

Upstream 100 bases:

>100_bases
GGCGGGCGCGCCGCGCACCGGCAAGCCGGTCGCGCGCCGCCGCTCGGGCCCGGGCGTGCCGCCCAAGCAGGGCTCGTCCA
ACTAAGCGCCGGAGACGCAC

Downstream 100 bases:

>100_bases
GCGCCCTCCCCGCACGACACAGGCCGGTTCCTCGCGAACCGGCTTTTTTTCGTCAGCGGGTTGCGGGCGGCCGGTCGGGG
GTCAGCGGTCAGGGTCTGAC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQLEPVRATLGTLGYADAQVQN
FGTSRNVLIRLPLKQGLTSAQQSDQVMAALKAQNADVALQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKY
AVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRRERKMTVQEVINHAITSTMSRTI
ITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDLVKEKKSAHDPNDPNAGAQV

Sequences:

>Translated_316_residues
MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQLEPVRATLGTLGYADAQVQN
FGTSRNVLIRLPLKQGLTSAQQSDQVMAALKAQNADVALQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKY
AVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRRERKMTVQEVINHAITSTMSRTI
ITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDLVKEKKSAHDPNDPNAGAQV
>Mature_316_residues
MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQLEPVRATLGTLGYADAQVQN
FGTSRNVLIRLPLKQGLTSAQQSDQVMAALKAQNADVALQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKY
AVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRRERKMTVQEVINHAITSTMSRTI
ITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDLVKEKKSAHDPNDPNAGAQV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=307, Percent_Identity=38.4364820846906, Blast_Score=245, Evalue=3e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35138; Mature: 35138

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEHHHHHC
LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQSDQVMAALKAQNADVALQ
CCHHHHHHHHCCCCHHHHHHCCCCCCEEEEECHHHCCCHHHHHHHHHHHHHHCCCHHHHH
RVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRRERKMTVQEVINHAITSTMSRTI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDLVKE
EEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KKSAHDPNDPNAGAQV
HHCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEHHHHHC
LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQSDQVMAALKAQNADVALQ
CCHHHHHHHHCCCCHHHHHHCCCCCCEEEEECHHHCCCHHHHHHHHHHHHHHCCCHHHHH
RVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRRERKMTVQEVINHAITSTMSRTI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDLVKE
EEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KKSAHDPNDPNAGAQV
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]