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The map label for this gene is cycA [H]

Identifier: 126455317

GI number: 126455317

Start: 3685601

End: 3686221

Strand: Reverse

Name: cycA [H]

Synonym: BURPS1106A_3772

Alternate gene names: 126455317

Gene position: 3686221-3685601 (Counterclockwise)

Preceding gene: 126453650

Following gene: 126454376

Centisome position: 92.42

GC content: 66.83

Gene sequence:

>621_bases
GTGCTTCAGTTCGCGGTAGCAGGGCTCGCAGGTTTCATGGCGGAGGCAAGGGCGGCGGATGCGGCGAAGCCGGATCTCGA
CCGAGGCAAGGCAATCGCGACGCAGGTATGCGCGGCATGCCACGGCGTCGACGGCAACAGCGCGACGGGTTCGTTCCCGA
AGCTCGCCGGTCAGCATCCCGATTATCTCGTCAAGCAATTGCACGATTTCAAGACGCAGCCGGGCGCGAAGGGGCCGGTG
CGCGTCAATTCCGTGATGGTCGGATTCGCAAGCGCGCTGAACGATCAGGACGCGCGCAACGTCGCCGCCTATTACGGATC
GCAGTCGGCCAAGCCGGGCGCCGCGCGCAACGCGGCCACCGTGCCCGTCGGGCAGAAGATCTATCGCGGCGGCATCGCCG
AGAAGGGCGTGCCCGCCTGCGCGAGCTGCCACGGGCCGACTGGGCAGGGGATTCCGGTCCAGTACCCGCGGTTGTCGGGG
CAATGGGCCGACTATACCGTCGCGCAGTTGACCGCGTTCCAGCAAGGCACGCGCAGCAACGACGCGATGCATCAGATCGC
GTTGCGGCTGACGGACAGCGAGGTCAAGGCCGTCGCCGATTACATCGCCGGCCTGCATTGA

Upstream 100 bases:

>100_bases
TTCTACGGTAGACTGGGCGCCGTCGTTTTTTGCAGAACCTCACTACTCCCACAAGACGAAACAAGGTGTGCGAATGAATC
GACTGAGCAAGTCTTTGGTG

Downstream 100 bases:

>100_bases
CCCGGGTTTCCGGTTCGCGAGCCGAATGAACGAGCCGGCCGCCCATGCGGCGGCCGCTAGAACAAGAAAAGGGTGGGGCG
CCGTCGAAGTACGGCCGCCT

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFKTQPGAKGPV
RVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSG
QWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH

Sequences:

>Translated_206_residues
MLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFKTQPGAKGPV
RVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSG
QWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH
>Mature_206_residues
MLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFKTQPGAKGPV
RVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSG
QWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21409; Mature: 21409

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHP
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCH
DYLVKQLHDFKTQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAAT
HHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
VPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLTAFQQGTRSN
CCCCHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
DAMHQIALRLTDSEVKAVADYIAGLH
HHHHHHHHHHCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHP
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCH
DYLVKQLHDFKTQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAAT
HHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
VPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLTAFQQGTRSN
CCCCHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
DAMHQIALRLTDSEVKAVADYIAGLH
HHHHHHHHHHCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7619830; 6089759 [H]