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The map label for this gene is fliR [H]

Identifier: 126455304

GI number: 126455304

Start: 32136

End: 32918

Strand: Direct

Name: fliR [H]

Synonym: BURPS1106A_0034

Alternate gene names: 126455304

Gene position: 32136-32918 (Clockwise)

Preceding gene: 126454577

Following gene: 126453010

Centisome position: 0.81

GC content: 67.94

Gene sequence:

>783_bases
ATGTTCTCCGTCACCTACGCGCAACTGAACGGCTGGCTCACCGCCTTTCTGTGGCCGTTCGTGCGGATGCTCGCGCTCGT
CGCGATCGCGCCGGTGACGGGCCACCGCTCGACGCCCGTGCGCGTGAAGATCGGCCTCGCGGGCTTCATGGCGCTCGTCG
TCGCGCCGACGCTGCCGCCGATGCCGGTGGCCACCGTGTTCTCCGCGCAGGGCGTGTGGATCATCGTCAACCAGTTCCTG
ATCGGCGCGGCGCTCGGCTTCACGATGCAGATCGTGTTCGCGGCGATCGAGGCGGCGGGCGACATCATCGGCCTGTCGAT
GGGGCTCGGCTTCGCGACCTTCTTCGATCCGCATTCGAGCGGCGCGACGCCCGTGATGGGGCGTTTCCTGAACGCGGTCG
CGATCCTCGCGTTTCTCGCGTTCGACGGGCATTTGCAGGTGTTCGCGGCGCTCGTCGATTCGTTCAGGCTCGTGCCGGTC
TCGGCCGATCTGCTGCGCGCGGCCGGCTGGCAGACGCTCGTCGCGTTCGGCGCGGCGATTTTCGAGATGGGGCTGTTGCT
CGCGCTGCCCGTCGTCGCGGCGCTGCTGATCGCGAATCTCGCGCTCGGCATCCTCAATCGCGCCGCGCCGCAGATCGGGA
TCTTCCAGGTCGGCTTTCCGGTGACGATGCTCGTCGGCCTGCTGCTCGTCCAGCTGATGGCGCCGAACCTGATTCCGTTC
GTCGGGCGGCTGTTCGATACCGGCGTCGATTTCGTCGGGCGCGTCGCGGCCGGCATGCATTGA

Upstream 100 bases:

>100_bases
GCCCGCCGCGCCGGGCGTCGCGTCCGCCTCGACCGATTCGCCTGATCCGCCCGATTCGTCGGCTCGTTCCGCCCGTCCTC
GCTTTCGCCATCCTCGACCG

Downstream 100 bases:

>100_bases
GCCGGACGGCGCGCGGGAGGCGCCGCCGCGCCGGCTCCCGGCAGGCCGGCGAGAGCTTCGGCGGCGGCGTCCCGCACGCG
GTGCGTCGCTCGCCGGCGGC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVWIIVNQFL
IGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPV
SADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF
VGRLFDTGVDFVGRVAAGMH

Sequences:

>Translated_260_residues
MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVWIIVNQFL
IGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPV
SADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF
VGRLFDTGVDFVGRVAAGMH
>Mature_260_residues
MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVWIIVNQFL
IGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPV
SADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF
VGRLFDTGVDFVGRVAAGMH

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=259, Percent_Identity=45.1737451737452, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27346; Mature: 27346

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCC
MPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
GATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAI
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCHHHHHHCCHHHHHHHHHHH
FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHH
VGRLFDTGVDFVGRVAAGMH
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCC
MPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
GATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAI
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCHHHHHHCCHHHHHHHHHHH
FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHH
VGRLFDTGVDFVGRVAAGMH
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]