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The map label for this gene is 126455217

Identifier: 126455217

GI number: 126455217

Start: 1203656

End: 1204588

Strand: Reverse

Name: 126455217

Synonym: BURPS1106A_1221

Alternate gene names: NA

Gene position: 1204588-1203656 (Counterclockwise)

Preceding gene: 126453916

Following gene: 126455220

Centisome position: 30.2

GC content: 69.13

Gene sequence:

>933_bases
TTGGTTTTTCAAGCCGCCTTTCAAGCCCATCCCAAGAACATGACCGAAACCTCCCGTCCGGCGCCGTCCGACGAACCGTT
CGCCGCGCTGCGTCCGCGCCTTTTCTCGATCGCGTACCGAATGCTCGGCACGCGCGCCGATGCCGAAGACGTGCTGCAGG
ACGCCTGGCTGCGCTGGCACCAGGCCGAACGCGACACGCTCGATTCGCCCGAGGCATGGCTCGTCACGGTCGTCACCCGG
CTGTCGATCGATCGGCTGCGCGCCGCGAAGGCGCAGCGCGACGCCTATGTCGGATGGTGGCTCCCCGAGCCGCTCGTCGA
CATCGACGAGCGCACGCCCGAGGCCGCGGCCGAGTTCGCCGACGACCTGTCGGTGGCGCTACTGTGGGTGCTCGAACGGC
TCTCGCCCGAGGAACGCGCGGCATTCCTGCTGCGCCAGGCGTTCGAGCGCGACTACGCGGAAATCGCGCAACTGCTCGAC
AAGAGCGAAGCGGCCTGCCGCCAGCTCGTCCACCGCGCGTCGACGCGCGTGCAGCAGGAACACCGGCGCTTCGACGTATC
GCGCGAGCGCCACCGGCAACTCGTCGAGCGCTTCGCGCGCGCCGCGGCAAGCGGCGAGCGCAACGCGATCCGGGCGCTGC
TCGCCGACGACGTGGAACTGGTCGGCGACGGCGGCGGCAAGGTGCCGTCGTTCTTCAAGGTGCTGCGCGGCGCGCTCCGG
ATCGCGAATCTGTATTGGGCCGTCGGCCGACGCCATGCCGGGCAGATCGAATACCGGCTCGCGCAAATCAACGGCGAACC
GGGCCTGCTGCGCTTCATCGACGGACGGATCGAATCGGCACAGGCGTTCGCCACCGACGGCGCGCGGATCGTCGCGATCT
ACGCGGTGCGCAATCCGGACAAGCTCGCGCATATTCCGAACCGCCCGGCGTGA

Upstream 100 bases:

>100_bases
CGCGTGCCGCCGATTCGCGCATCATCCGGCAGCGGGCGTCCCCGCCGCGCCCGCGGCTGTCACAAATGCGTCGTCTGCTT
CGTCTTGATCATTCGAACCG

Downstream 100 bases:

>100_bases
CCCGCGGCGCGCGCAGGCCGACGCGTCCGGCACGCGCGAAGCGCCGCGTCCCGCCCGCGCGCCGCCCGCCGCGGCCCCGC
CGCATCGCGCGACGCGGCAT

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; ECF Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; Sigma Factor Protein; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MVFQAAFQAHPKNMTETSRPAPSDEPFAALRPRLFSIAYRMLGTRADAEDVLQDAWLRWHQAERDTLDSPEAWLVTVVTR
LSIDRLRAAKAQRDAYVGWWLPEPLVDIDERTPEAAAEFADDLSVALLWVLERLSPEERAAFLLRQAFERDYAEIAQLLD
KSEAACRQLVHRASTRVQQEHRRFDVSRERHRQLVERFARAAASGERNAIRALLADDVELVGDGGGKVPSFFKVLRGALR
IANLYWAVGRRHAGQIEYRLAQINGEPGLLRFIDGRIESAQAFATDGARIVAIYAVRNPDKLAHIPNRPA

Sequences:

>Translated_310_residues
MVFQAAFQAHPKNMTETSRPAPSDEPFAALRPRLFSIAYRMLGTRADAEDVLQDAWLRWHQAERDTLDSPEAWLVTVVTR
LSIDRLRAAKAQRDAYVGWWLPEPLVDIDERTPEAAAEFADDLSVALLWVLERLSPEERAAFLLRQAFERDYAEIAQLLD
KSEAACRQLVHRASTRVQQEHRRFDVSRERHRQLVERFARAAASGERNAIRALLADDVELVGDGGGKVPSFFKVLRGALR
IANLYWAVGRRHAGQIEYRLAQINGEPGLLRFIDGRIESAQAFATDGARIVAIYAVRNPDKLAHIPNRPA
>Mature_310_residues
MVFQAAFQAHPKNMTETSRPAPSDEPFAALRPRLFSIAYRMLGTRADAEDVLQDAWLRWHQAERDTLDSPEAWLVTVVTR
LSIDRLRAAKAQRDAYVGWWLPEPLVDIDERTPEAAAEFADDLSVALLWVLERLSPEERAAFLLRQAFERDYAEIAQLLD
KSEAACRQLVHRASTRVQQEHRRFDVSRERHRQLVERFARAAASGERNAIRALLADDVELVGDGGGKVPSFFKVLRGALR
IANLYWAVGRRHAGQIEYRLAQINGEPGLLRFIDGRIESAQAFATDGARIVAIYAVRNPDKLAHIPNRPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35095; Mature: 35095

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFQAAFQAHPKNMTETSRPAPSDEPFAALRPRLFSIAYRMLGTRADAEDVLQDAWLRWH
CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QAERDTLDSPEAWLVTVVTRLSIDRLRAAKAQRDAYVGWWLPEPLVDIDERTPEAAAEFA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHH
DDLSVALLWVLERLSPEERAAFLLRQAFERDYAEIAQLLDKSEAACRQLVHRASTRVQQE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
HRRFDVSRERHRQLVERFARAAASGERNAIRALLADDVELVGDGGGKVPSFFKVLRGALR
HHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHEECCCCCCCHHHHHHHHHHHH
IANLYWAVGRRHAGQIEYRLAQINGEPGLLRFIDGRIESAQAFATDGARIVAIYAVRNPD
HHHHHHHHHCCCCCCCEEEEEEECCCCCEEHHHHCHHHHHHHHHCCCCEEEEEEEECCCH
KLAHIPNRPA
HHCCCCCCCC
>Mature Secondary Structure
MVFQAAFQAHPKNMTETSRPAPSDEPFAALRPRLFSIAYRMLGTRADAEDVLQDAWLRWH
CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QAERDTLDSPEAWLVTVVTRLSIDRLRAAKAQRDAYVGWWLPEPLVDIDERTPEAAAEFA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHH
DDLSVALLWVLERLSPEERAAFLLRQAFERDYAEIAQLLDKSEAACRQLVHRASTRVQQE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
HRRFDVSRERHRQLVERFARAAASGERNAIRALLADDVELVGDGGGKVPSFFKVLRGALR
HHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHEECCCCCCCHHHHHHHHHHHH
IANLYWAVGRRHAGQIEYRLAQINGEPGLLRFIDGRIESAQAFATDGARIVAIYAVRNPD
HHHHHHHHHCCCCCCCEEEEEEECCCCCEEHHHHCHHHHHHHHHCCCCEEEEEEEECCCH
KLAHIPNRPA
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA