Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 126455125

GI number: 126455125

Start: 898656

End: 899657

Strand: Direct

Name: xerD [H]

Synonym: BURPS1106A_0914

Alternate gene names: 126455125

Gene position: 898656-899657 (Clockwise)

Preceding gene: 126452266

Following gene: 126451771

Centisome position: 22.53

GC content: 69.26

Gene sequence:

>1002_bases
ATGGCGCGCGCAGTGCATGCTTGCGCGGCCGACACGGCGGGCGGCGACGCCGGCCGCGCACCCGCGCAGCCGGCCGACCG
TCCCGTGGACGCGCTTGCCGCGTCGCCGGCGTGGCTCGACAGCCGCGCGTCGATCGATCTGTTCTGCGACGCGATGTGGC
TCGAGCACGGGCTGTCGCGCAACACGCTCGACGCGTACCGGCGTGATCTGCAACTGTTCGCGCAATGGCTCGCCGCGCGG
CATGCGGCGAGCGTCGATCATGCGAGCGAGCCGACGCTGACCGAATACATCGCCGCGCGCAGCGACGGCAAGGCGACGTC
GTCGAATCGCCGGCTATCGGTGTTTCGCCGCTACTACGGCTGGGCGGTGCGCGAGCACCGCGCGGCCGTCGATCCGACGC
TCAGGATCGCGTCGGCGAAGCAGGCGCCGAGGTTTCCGTCGACGCTGTCCGAGGCGCAGGTCGAGGCGCTTCTCGCCGCG
CCCGACGTCGATACGCCGCTCGGCCTGCGCGACCGCACGATGCTCGAACTGATGTATGCGAGCGGGTTGCGCGTGAGCGA
GCTCGTCACGCTGAAGACGGTCGAGGTCGGATTGAACGAAGGCGTGGTGCGCGTGACGGGCAAGGGTTCGAAAGAGCGGC
TCGTGCCGTTCGGCGAAGTCGCGCACGGCTGGATCGAGCGCTATCTGCGCGATGCACGGCCCGCGCTACTCGGTGCGCGC
GCGGCGGATGCGCTGTTCGTCACCGCACGCGGCGACGGCATGACGCGCCAGCAATTCTGGAACATCATCAAGCGCCATGC
GCAGCAGGCGGATGTTCGCGTGCATCTGTCGCCGCATACGCTGCGGCACGCGTTCGCGACGCATCTGCTCAATCACGGCG
CGGACCTGCGGGTCGTGCAACTGCTGCTCGGCCATAGCGATATCTCGACGACGCAGATCTACACGCACGTCGCGCGCGAG
CGGCTGAAGACGCTGCATGCGGCGCATCATCCGCGCGGATGA

Upstream 100 bases:

>100_bases
TCGCGTCGGGCGGGCTCGGCGGCTTCGCGAACCACGACGACGAGGGCTACTTCCTCAAGGTCAAGCGCTGGCTGCTTGCA
CACGAGGGCGTGCGGTACTG

Downstream 100 bases:

>100_bases
CGCGCGGCGAGGCCGCGGCGGCGCCGTGCCTGCACGAACCTCGGCGTCGACGCGCGCAGGGCGCGATGTGCTTGACATGC
TCGATCGTTTTTGCGGCGGT

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAAR
HAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAA
PDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGAR
AADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARE
RLKTLHAAHHPRG

Sequences:

>Translated_333_residues
MARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAAR
HAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAA
PDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGAR
AADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARE
RLKTLHAAHHPRG
>Mature_332_residues
ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH
AASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAP
DVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA
ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER
LKTLHAAHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=56.1224489795918, Blast_Score=306, Evalue=2e-84,
Organism=Escherichia coli, GI1790244, Length=300, Percent_Identity=38.3333333333333, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1790768, Length=168, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790767, Length=173, Percent_Identity=27.1676300578035, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36647; Mature: 36516

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSR
CCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
NTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
WAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYA
HHHHHHHHHCCCHHEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
SGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGAR
CCCCHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCC
AADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQ
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHH
LLLGHSDISTTQIYTHVARERLKTLHAAHHPRG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSR
CCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
NTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
WAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYA
HHHHHHHHHCCCHHEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
SGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGAR
CCCCHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCC
AADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQ
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHH
LLLGHSDISTTQIYTHVARERLKTLHAAHHPRG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]