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The map label for this gene is atpD

Identifier: 126455115

GI number: 126455115

Start: 3948549

End: 3949943

Strand: Reverse

Name: atpD

Synonym: BURPS1106A_4042

Alternate gene names: 126455115

Gene position: 3949943-3948549 (Counterclockwise)

Preceding gene: 126453818

Following gene: 126453887

Centisome position: 99.03

GC content: 62.58

Gene sequence:

>1395_bases
ATGAGTACTGCTGCTTTGGTAGAAGGCAAGATCGTACAGTGCATCGGCGCCGTTATCGACGTGGAATTCCCGCGCGAGAG
CATGCCGAAGATCTACGACGCGCTCATTCTGGAAGGCTCGGAACTGACGCTCGAAGTCCAGCAGCAGCTGGGCGACGGCG
TGGTCCGTACCATCTGTCTGGGTGCCTCCGACGGCCTGCGCCGCGGCGTCGTGGTGAAGAATACGGGCAATCCGATTTCG
GTGCCGGTCGGCAAGCCGACCCTCGGCCGCATCATGGACGTGCTCGGCCGCCCGATCGACGAGGCGGGACCGATCGAGAG
CGAAAACAAGCGCTCGATCCACCAGAAGGCGCCGGCGTTCGACGAGCTGTCGCCGTCGACCGAACTGCTCGAAACGGGTA
TCAAGGTCATCGATCTGATCTGCCCGTTCGCAAAGGGCGGCAAGGTCGGCCTGTTCGGCGGCGCGGGCGTGGGCAAGACC
GTCAACATGATGGAGCTCATCAACAACATCGCGAAGGAGCACGGCGGTTACTCCGTGTTCGCGGGCGTGGGCGAGCGTAC
CCGTGAAGGGAACGACTTCTACCACGAAATGAAGGACTCGAACGTTCTCGACAAGGTCGCGCTGGTGTACGGCCAGATGA
ACGAGCCGCCGGGCAACCGTCTGCGCGTCGCGCTGACGGGCCTCACGATGGCCGAGCACTTCCGTGACGAAGGCCTCGAC
GTGCTGTTCTTCGTCGACAACATCTACCGTTTCACGCTGGCCGGTACCGAAGTGTCGGCGCTGCTCGGCCGTATGCCGTC
GGCAGTGGGCTATCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAAGAGCGCATCACGTCGACGAAGAAAGGCTCGA
TCACGTCGGTTCAGGCCGTGTACGTGCCTGCGGACGACTTGACCGACCCGTCGCCGGCCACCACCTTCGGCCACTTGGAC
GCAACCGTCGTTCTGTCGCGTGACATCGCATCGCTCGGTATCTATCCGGCCGTCGACCCGCTCGACTCGACGTCGCGCCA
GATCGACCCGAACGTGATCGGCGAAGAGCACTACTCGATCACCCGCCGCGTTCAGCAGACGCTGCAGCGCTACAAGGAAC
TGCGCGACATCATCGCGATTCTGGGCATGGACGAGCTGTCGCCGGAAGACAAGCTGTCGGTTGCGCGCGCACGTAAGATC
CAGCGTTTCCTGTCGCAGCCGTTCCACGTCGCCGAAGTGTTCACGGGCTCGCCGGGCAAGTACGTGCCCCTGAAGGAAAC
GATCCGCGGCTTCAAGATGATCGTCGACGGCGAGTGCGACCACCTGCCGGAACAGGCGTTCTACATGGTCGGCACGATCG
ACGAAGCCTTCGAGAAGGCCAAGAAGATCCAGTAA

Upstream 100 bases:

>100_bases
GGCGGCGCCGCCGCGGTGTAACGCGGCACGCGCGACGCCGGCTGCGTCTCGAAACTGCGCCTTTGCGCGAGTAAAGAATC
AGGTATTGAAAGGAAAAGCG

Downstream 100 bases:

>100_bases
CGGCCGGGTGTAACGCAACGGGCGCCGTGAAGCGGTGTTCATCCCGTCCACGCGTGGACGGGGATACGGCGCTTGCGTAA
CACGCTCAACCGTGCCTGCA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPIS
VPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Sequences:

>Translated_464_residues
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPIS
VPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>Mature_463_residues
STAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPISV
PVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTV
NMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDV
LFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDA
TVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQ
RFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=69.5095948827292, Blast_Score=650, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=321, Percent_Identity=26.4797507788162, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI4757810, Length=321, Percent_Identity=26.4797507788162, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=27.4143302180685, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI19913428, Length=424, Percent_Identity=24.5283018867925, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913426, Length=403, Percent_Identity=24.0694789081886, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=80.4347826086957, Blast_Score=750, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=306, Percent_Identity=31.3725490196078, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1790172, Length=339, Percent_Identity=25.3687315634218, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=69.0021231422505, Blast_Score=649, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=319, Percent_Identity=29.153605015674, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71988080, Length=321, Percent_Identity=25.8566978193146, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=354, Percent_Identity=26.271186440678, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71988063, Length=321, Percent_Identity=25.8566978193146, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=405, Percent_Identity=24.1975308641975, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=264, Percent_Identity=24.6212121212121, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=466, Percent_Identity=65.8798283261803, Blast_Score=620, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319370, Length=419, Percent_Identity=25.0596658711217, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319603, Length=407, Percent_Identity=25.7985257985258, Blast_Score=116, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=26.9565217391304, Blast_Score=83, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.3189655172414, Blast_Score=635, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=63.9484978540773, Blast_Score=592, Evalue=1e-169,
Organism=Drosophila melanogaster, GI24583988, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583986, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583984, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI281361666, Length=413, Percent_Identity=25.181598062954, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24646341, Length=413, Percent_Identity=25.181598062954, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136796, Length=413, Percent_Identity=25.181598062954, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=27.6073619631902, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.2131661442006, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24658560, Length=321, Percent_Identity=25.5451713395639, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=48.9130434782609, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB1_BURM7 (A3MQJ9)

Other databases:

- EMBL:   CP000548
- RefSeq:   YP_001082535.1
- ProteinModelPortal:   A3MQJ9
- SMR:   A3MQJ9
- GeneID:   4893959
- GenomeReviews:   CP000548_GR
- KEGG:   bmn:BMA10247_3015
- TIGR:   BMA10247_3015
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   BMAL320389:BMA10247_3015-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50624; Mature: 50493

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICL
CCCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHC
GASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAF
CCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAV
EEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCC
YVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHEEEECCCCCCCCHHHEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICL
CCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHC
GASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAF
CCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAV
EEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCC
YVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHEEEECCCCCCCCHHHEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA