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The map label for this gene is ypjD [C]

Identifier: 126455100

GI number: 126455100

Start: 3420540

End: 3421439

Strand: Reverse

Name: ypjD [C]

Synonym: BURPS1106A_3516

Alternate gene names: 126455100

Gene position: 3421439-3420540 (Counterclockwise)

Preceding gene: 126453993

Following gene: 126454725

Centisome position: 85.78

GC content: 70.56

Gene sequence:

>900_bases
ATGGATATTGTACTGTATGCCCTTACCGTGCTCCTGTACGGCGGCTTGGCCGTCGCCGGCTGGCGCGCGCGCCGCGTCGG
CGCGGCACGCCCGCTCGTCGCGAGCGTGCCGGCCGTTGCGCCCGCGCGCGAATCCGCTCCGGGCGGGATGGGCGGGCTCG
GGCGCACGATCCTCGGCGCCGCGCTGCTCGCGCACGGGGTGCTGCTGCACATGACGATCTTTCCGCACGACGCGATGGTG
TTCGGCTTCGCGTTCGCGCTGTCGGCGATGTTCTGGCTCGGCGCGGGCATCTACTGGATCGAGAGCTTCTTCTTCCCGCT
CGACGGGATGCGCCTGCTCGTGCTGCCGCTCGCGGGCGTCGCGTCGCTCCTGCCGCTCGCGTTCGGCGGCGTGCGCGTGC
TGCCGTACGCGGCCGCGCCGCTCTTCAAGGTGCACTTCCTGATCGCGAACATCGCGTACGGGCTCTTCGCGATCGCGGCG
CTCCACGCGGTGCTGATGCTGATGGTCGAGCGGCGCCTGCATGCGCTGCGGCACGACGGGTTGCGCGACGCGTCGGGCTG
GGTCGCGGGCTGGCTCGACACGCTGCCGCCGCTTCTCACGCTCGAGAAGCTGCTGTTCCGCCTGATCGGCGCGGGTTTCG
TGCTGCTCACGCTGACGCTCGCCACCGGCATCCTGTTCAGCGAGCAGATCGACGCGCGCGCGCTCAAGCTCGATCACAAG
ACCGTGTTCGCGATCCTGTCCTGGCTGATGTTCGGCGGGCTCCTCGTCGCGCACAAGACCTCCGGCTGGCGCGGCCGCGG
CGCGGCGCGCTGGGTGCTCGCGTCGTTCGTCGCGCTGCTGCTCGCGTACGTCGGCAGCCGCTTCGTTCTCGAGGTGCTGC
TGCACCGTTCCGTGGTTTGA

Upstream 100 bases:

>100_bases
GATTGTCGAGCATGGGGAGCGATGGACAGTGAAGCCCGCAGGCGCGAGTGGGACAAAAAGCCGGCCGTCGCGGGTAAGGG
GCCTAGTGTAAACTTCGAAC

Downstream 100 bases:

>100_bases
ACACCTGATCCCGATGCGACAAATCCTTCTTCTCATCGTGCTGTTCTTCGCGAGTTCGTGGGTCGCGAGAAAGATTCGTC
AGGCGCAGGCGCGCGGCGAC

Product: cytochrome C assembly family protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDIVLYALTVLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAA
LHAVLMLMVERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHK
TVFAILSWLMFGGLLVAHKTSGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV

Sequences:

>Translated_299_residues
MDIVLYALTVLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAA
LHAVLMLMVERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHK
TVFAILSWLMFGGLLVAHKTSGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
>Mature_299_residues
MDIVLYALTVLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAA
LHAVLMLMVERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHK
TVFAILSWLMFGGLLVAHKTSGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32168; Mature: 32168

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVLYALTVLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGA
CHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALLAHGVLLHMTIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGV
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMVERRLHALRHDG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHK
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFAILSWLMFGGLLVAHKTSGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIVLYALTVLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGA
CHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALLAHGVLLHMTIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGV
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMVERRLHALRHDG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHK
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFAILSWLMFGGLLVAHKTSGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]