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The map label for this gene is yfdE [H]

Identifier: 126455081

GI number: 126455081

Start: 1609832

End: 1611052

Strand: Reverse

Name: yfdE [H]

Synonym: BURPS1106A_1658

Alternate gene names: 126455081

Gene position: 1611052-1609832 (Counterclockwise)

Preceding gene: 126451668

Following gene: 126454246

Centisome position: 40.39

GC content: 71.17

Gene sequence:

>1221_bases
ATGGGAGCCCTCAGCCACATCCGCGTCCTGGACCTGAGCCGCGTGCTCGCGGGCCCGTGGTGCGCGCAGACGCTTGCCGA
TCTCGGCGCCGACGTGATCAAGGTCGAGCGCCCGGAGTGCGGCGACGACACCCGGCACTGGGGCCCGCCGTACCTGAAGA
CGCCGGACGGCGCCGACACCCGCGAAGCCGCGTACTACCTCGCCGCGAACCGCAACAAGCGCTCGGTGACGGTCGATATC
GCGACGCCCGAGGGCCAGCGGATCATCCGCGAGCTCGCCGCGCAATGCGACGTCGTGCTCGAGAACTACAAGGTCGGCCA
GCTCGCGAAATACGGGCTCGACTACGCGTCGCTCGCGGCCGTGAAGCCCGGCCTCGTCTATTGCTCGGTGACGGGCTTCG
GCCAGACGGGCCCGTACGCGCACCGCGCCGGCTACGACTTCATCATCCAGGGGATGGGCGGCTTCATGAGCATCACCGGC
GAGCGCGACGGCCTGCCGGGCGGCGGCCCGCAGAAGGCGGGCGTCGCGATCGCCGATCTCGCGACGGGCCTGTACTCGAC
GATCGCGATCCTCGCCGCGCTCGCGCACCGCGACCGCACGGGCGAAGGCCAGCACATCGACATGGCGCTCCTCGACGTGC
AGGTGGCGCTCCTCGCGAACATGAACACGAACTTCCTCGCGAGCGGCAAGCCGCCCGTGCGCTGGGGCAACGCACATCCG
AACATCGTGCCGTACCAGACGTTCGAGACGAGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGCCAGTTCCGCAA
GTTCGTCGAGGCGGGCGGGCGCCCCGAGCTCGCCGACGACGAGCGCTTCGCGACGAACCCCGCGCGCGTGCGCCACCGCG
ACACGCTCGTGCCGATCGTCGCCGCGATGACGAAGACGCGCACGAAGCGCGAGTGGCTCGACGCGCTCGAGGCGCTCGGC
GTGCCGTGCGGACCGATCAACGACCTCGCCGAAGTGTTCGACGACGAGCAGGTGCGCGCGCGCGGCATGCAGGTCGATTT
GCCGCATCCGAGCGGCGCGAGCGCGAAGCTCGTGCGCAATCCGATCCGGATGAGCGCGACGCCGCCCGACGCGCGCAGCG
CGCCGCCGCTGCTCGGCGAGCACACGGACGCGGTGCTGCGCGACCTGCTGGGTTACGGCGACGCGGCGATCGCCGCGCTC
AGGGACAAGCGCGTCGTCTGA

Upstream 100 bases:

>100_bases
ATGCGGCGGGAGACGATTCACCGAACACGCGCCCGCGCGGACGCGCCGCGAACGGCGCGCCCACCCGAAAAGCGCAACCA
ACAGAGGAGACAGATCGAAG

Downstream 100 bases:

>100_bases
GCACGGCGCGCGGCCGGCCGCGCGCCCGCTTGCCGTGCGTCGCCGGTAGCGCGCGGCGCTCCTGCAGCCTCCTGAACGAC
GCCGTAAACGGCAACAGGGC

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDI
ATPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITG
ERDGLPGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALEALG
VPCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAAL
RDKRVV

Sequences:

>Translated_406_residues
MGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDI
ATPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITG
ERDGLPGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALEALG
VPCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAAL
RDKRVV
>Mature_405_residues
GALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIA
TPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGE
RDGLPGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPN
IVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALEALGV
PCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALR
DKRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=44.4168734491315, Blast_Score=355, Evalue=4e-98,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=41.7249417249417, Blast_Score=342, Evalue=5e-94,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=38.4615384615385, Blast_Score=295, Evalue=6e-80,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=37.995337995338, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=28.1173594132029, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=28.1173594132029, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=31.1355311355311, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=31.1355311355311, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.2883435582822, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.2883435582822, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=389, Percent_Identity=33.6760925449871, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=32, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1786222, Length=412, Percent_Identity=23.7864077669903, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=372, Percent_Identity=24.4623655913978, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=333, Percent_Identity=25.8258258258258, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.394540942928, Blast_Score=369, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=355, Percent_Identity=28.169014084507, Blast_Score=116, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43635; Mature: 43504

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCH
REAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
VKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
ATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIV
CCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH
AAMTKTRTKREWLDALEALGVPCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEEECCCCCCCCHHHHHC
PIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
GALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCH
REAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
VKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
ATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIV
CCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH
AAMTKTRTKREWLDALEALGVPCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEEECCCCCCCCHHHHHC
PIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]