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The map label for this gene is radC [C]

Identifier: 126455030

GI number: 126455030

Start: 965859

End: 966695

Strand: Reverse

Name: radC [C]

Synonym: BURPS1106A_0984

Alternate gene names: 126455030

Gene position: 966695-965859 (Counterclockwise)

Preceding gene: 126453563

Following gene: 126452424

Centisome position: 24.24

GC content: 74.07

Gene sequence:

>837_bases
ATGCAATACGAGATTGTCTCGGCCGGCGAAGACGTCGACGACGAGCGCGCGCGCGGGCGCCGCGCCGCCGCGCCGGCCGC
CCCATCGTCCGCCGTCCCGTCATCCGCGGCCCTATCATCCGCAGCCTTGTCATCCGCCGCGCAGCCGACGGGCGCGCCGC
CGGCTACGGCCGCCGCGCGTCGCGGCCGCGATCTGCCGCGCGAGCGCCTGCTCGCGCGCGGCCCCGCCGCGCTGTCCGAC
GCGGAACTCGTCGCGCTCCTGCTCGGCTCGGGCCTGCCCGGCCACGACGTGTTCGCGCTCGCGCACACGCTGCTCGCGCG
CTTCGGCTCGTTGCGCGCGCTGCTCGACGCGGCGCCCGACGATTTCAAGGGCCTGCGCGGCATCGGCCCCGCGCGCACCG
CGATCCTCGTCGCGGTCGTCGAGCTCGCGCGGCGCGCGCTCGCCGAGAAGGCCCGCGAGCGGCCGCTCGTCGATTCGCCG
GGCGCGGTCGACGACTATCTGCGGCTGCTGATCGGCACGCGGCCGCGCGAAGTGTTCGTCTGCCTCTTTCTCGACGCTCG
GCACCGGCTCGTGCAGACGGAAGAAACCGCGCACGGCTCGCTCACGCGGATGGCCGTCTATCCGCGCGAGATCGTGCGGC
GCGCGCTCGCGCTGAACGCGGCGGCGCTCATCGTCGCGCACAATCATCCGTCGGGCGCGGTGCGACCGAGCGCCGCGGAC
CGGCGCCTCACGCGCGTGCTGCGCGACGCGCTCGCGCTCGTCGACATCAAGCTGATCGATCATTTCGTGGTCGGCGCGAG
CGATACGTTTTCGTTCGCGCAAGCGGGCTGGATCTAG

Upstream 100 bases:

>100_bases
AGCGCAGCGCAAAGCCCATATTGTAAGTCACCTCGGCGATCGAAGCGGAATGCCGGCGCGATTCGCCTTGCGAGCACGCA
GGATATTGGAGGTCAGCAGC

Downstream 100 bases:

>100_bases
CGCGGCGCAAACGCCCCGCGCCGCGCCCGGGGCGTTTGCGCGGCCGGGCCCGGCGCCCCGCCGCATCCGCATGCGAAATT
GGGTTTGATTTTCCTGAAGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQYEIVSAGEDVDDERARGRRAAAPAAPSSAVPSSAALSSAALSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSD
AELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSP
GAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAAD
RRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI

Sequences:

>Translated_278_residues
MQYEIVSAGEDVDDERARGRRAAAPAAPSSAVPSSAALSSAALSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSD
AELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSP
GAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAAD
RRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
>Mature_278_residues
MQYEIVSAGEDVDDERARGRRAAAPAAPSSAVPSSAALSSAALSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSD
AELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSP
GAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAAD
RRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=41.588785046729, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=47.4576271186441, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=45.7627118644068, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1788312, Length=118, Percent_Identity=45.7627118644068, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1139_BURP1 (Q3JV52)

Other databases:

- EMBL:   CP000124
- RefSeq:   YP_332551.1
- ProteinModelPortal:   Q3JV52
- SMR:   Q3JV52
- STRING:   Q3JV52
- GeneID:   3688804
- GenomeReviews:   CP000124_GR
- KEGG:   bpm:BURPS1710b_1139
- TIGR:   BURPS1710b_1139
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   BPSE320372:BURPS1710B_A1193-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 29394; Mature: 29394

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYEIVSAGEDVDDERARGRRAAAPAAPSSAVPSSAALSSAALSSAAQPTGAPPATAAAR
CCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
RGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPD
CCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHEEE
CLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAAD
EEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHH
RRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
>Mature Secondary Structure
MQYEIVSAGEDVDDERARGRRAAAPAAPSSAVPSSAALSSAALSSAAQPTGAPPATAAAR
CCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
RGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPD
CCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHEEE
CLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAAD
EEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHH
RRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA