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The map label for this gene is nusA [H]

Identifier: 126455004

GI number: 126455004

Start: 1719825

End: 1721300

Strand: Direct

Name: nusA [H]

Synonym: BURPS1106A_1761

Alternate gene names: 126455004

Gene position: 1719825-1721300 (Clockwise)

Preceding gene: 126452322

Following gene: 126455003

Centisome position: 43.12

GC content: 64.91

Gene sequence:

>1476_bases
ATGAGTCGCGAAGTGTTGATGTTGGTGGATGCGCTGGCGCGCGAGAAGAACGTCGACAAGGACGTCGTGCTGGGCGCGCT
CGAAGCGGCCCTCGCGTCGGCTTCCAAGAAGCTGTTCGACGAAGGCGCCGAGATCCGCGTACATATCGATCGCGAGAGCG
GTGAACACGAGACGTTCCGTCGCTGGCTCGTCGTGCCCGACGAGGCGGGCCTCCAAGAGCCGGATCGCGAGATCCTGCTG
TTCGAGGCGCGCGAGCAGAAGCCCGATGTCGAGGTCGGCGACTATATCGAAGAATCGGTGCCGTCGATCGAGTTCGGCCG
GATCGGCGCGCAGGCCGCGAAGCAGGTGATCCTGCAGAAGGTGCGCGACGCGGAGCGCGAGCAGATCCTGAACGATTACC
TCGAGCGCGGCGAGAAGATCATGACGGGCACGGTGAAGCGCCTCGACAAGGGCAACTTCATCGTCGAATCGGGCCGTGTC
GAGGCGCTGCTGCGCCGCGACCAACTGATTCCGAAGGAAAACCTGCGCGTGGGCGACCGCGTGCGCGCGTACATCGCGAA
GGTCGACCGCACCGCGCGCGGCCCGCAGATCGAGCTGTCGCGCACCGCGCCCGAATTCCTGATGAAGCTCTTCGAGATGG
AAGTGCCGGAAATCGAGCAGGGGCTTCTCGAGATCAAGGCGGCGGCCCGCGATCCGGGCGTGCGCGCGAAGATCGGCGTC
GTCGCGTACGACAAGCGGATCGATCCGATCGGCACGTGCGTCGGCATTCGCGGCTCGCGCGTGCAGGCCGTGCGCAACGA
GCTCGGTGGCGAAAACATCGACATCGTGCTATGGTCGGAGGATCCCGCCCAGTTCGTGATCGGCGCGCTCGCGCCGGCGG
CCGTCCAGTCGATCGTCGTCGATGAAGAAAAGCATTCGATGGACGTCGTCGTCGACGAGAACGAATTGGCTGTCGCGATC
GGCCGCAGCGGCCAGAACGTGCGTCTTGCCAGCGAACTGACCGGCTGGCAGATCAACATCATGACGCCGGACGAATCCGC
CCAGAAGCAGAACGAAGAGCGCGACGCGCTGCGCGGCCTGTTCATGGCGCGCCTCGACGTCGACGAGGAAGTCGCGGACA
TCCTGATCGACGAAGGCTTCACGAGCCTCGAAGAGATCGCCTACGTGCCGCTCAACGAGATGCTCGAGATCGAGGCGTTC
GACGAGGACACCGTGCACGAACTGCGCAACCGCTCGCGCGACGCGCTGCTCACGATGGCGATCGCGAACGAGGAGAAGGT
CGAGACGGCCGCCCTCGATCTGAAGAGCCTCGACGGCGTCACGCCCGAACTGCTCGCGAAGCTGGCCGAGCAGGGCGTGC
AGACGCGCGACGATCTCGCGGAGCTTGCCGTGGACGAGCTGGTCGACATGACCGGCATGGAAGAGGAAGCCGCGAAGGCG
CTGATCATGAAAGCACGCGAACACTGGTTCCAGTGA

Upstream 100 bases:

>100_bases
TTGAGAGGAAGAAGGGCGAGGCGGCCATGCTGGATTTCACGCTGGCGGACATCGACAAGGCCCGCCTGATTCCGCACGTT
GACTTTAGGAGCCGCAAACA

Downstream 100 bases:

>100_bases
GAAATGACCATGGCGCACTGATTTGCTGGCGGCCGGAAGGCCTGACCCGATGCTAACCGCAAGGAATCGGTCCTTGCACT
AAGAGGAATGAATGGCGAGT

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILL
FEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRV
EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
VAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAI
GRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAF
DEDTVHELRNRSRDALLTMAIANEEKVETAALDLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMTGMEEEAAKA
LIMKAREHWFQ

Sequences:

>Translated_491_residues
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILL
FEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRV
EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
VAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAI
GRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAF
DEDTVHELRNRSRDALLTMAIANEEKVETAALDLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMTGMEEEAAKA
LIMKAREHWFQ
>Mature_490_residues
SREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILLF
EAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVE
ALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVV
AYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAIG
RSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFD
EDTVHELRNRSRDALLTMAIANEEKVETAALDLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMTGMEEEAAKAL
IMKAREHWFQ

Specific function: Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=494, Percent_Identity=50.6072874493927, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010995
- InterPro:   IPR003583
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010214
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 54837; Mature: 54706

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFR
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
RWLVVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQK
EEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
VRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDR
HHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHH
VRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
VAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVV
EEECCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
DEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGL
CCCCCCEEEEECCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
FMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMA
HHHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHEEEECCCHHHHHHHHCCCCHHEEEEE
IANEEKVETAALDLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMTGMEEEAAKA
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LIMKAREHWFQ
HHHHHHHHHCC
>Mature Secondary Structure 
SREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFR
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
RWLVVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQK
EEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
VRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDR
HHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHH
VRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
VAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVV
EEECCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
DEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGL
CCCCCCEEEEECCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
FMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMA
HHHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHEEEECCCHHHHHHHHCCCCHHEEEEE
IANEEKVETAALDLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMTGMEEEAAKA
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LIMKAREHWFQ
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]