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The map label for this gene is glxA [H]

Identifier: 126454993

GI number: 126454993

Start: 2747752

End: 2748789

Strand: Reverse

Name: glxA [H]

Synonym: BURPS1106A_2788

Alternate gene names: 126454993

Gene position: 2748789-2747752 (Counterclockwise)

Preceding gene: 126454373

Following gene: 126452856

Centisome position: 68.92

GC content: 68.21

Gene sequence:

>1038_bases
GTGAATCGTCCAAGCAGTCCCGCCCGCACGATACAGGTGGCGATCGTCGCTTTGCCGCCCGTATCGATGTCGGGTGTCGG
GCCGATCGTCGACGCGCTGAATCTCGCCAACGAGATCGACGGGCGCTTGCTGTACCGCTGGCAGGTGTGTTCGTGGGACG
GCCGCGCGGTGCCGCTCGCGGGCGGCGCGCAATGGCACGCGCATGCCGCGTTCAACGACGCGATCGTCTGCGATTGGCTG
ATTGTCGTGAGCGAGCGCTTCCAGCAGTTCGCCGACTACCGGCTGTTTCTCGCGAGCCTCGCGCGGGTCGGCCAGCGCAC
GCCGCTCGTGACGGGCATCCATCACGGCGTGTGGTGGCTCGCGATGGCGGGGCAACTGTCGGGCTACCGGGTGAGCGTGA
ACTGGGAGACATACCAGCAGTTCGCCGAGCAGTTCGAGCGCTCGATCGTCACGCAGCAGATCTTCGAGATCGACCGCGAC
CGCGCGACGTGCGCGGGCGGCCAGGCGAGCGTGGATTTCATGCTGGCGATGATCGGCCGCGACCAGGGGCCGGAGCTGGC
GGAGCGGATTGCCGACGCGCTTGGCACCGGGCCGCTCAGAAGCGGCGAGGCGCGCCAGCGGATTCCGTTCGTGACGGCGC
CGGGCGAGCGGCATCCGCGGTTGAACGACGCGCTGCTGCTGATGGAGGCGAACATCGAGGATCCGCTGACGACCGACGAG
ATCGCGGGGCTCGTCGGCGTGTCGCGCCGGCAGCTCGAGCGACTCTTCAGACAGTATCTCGGCGCGATGCCGTCGAAGTA
CTACCTCAACTTGCGGCTCTTGAAGGCGCGCACGCAATTGCAGCGCACGAGCAAGTCGGTCGTGCAGGTGAGCCTCGCGT
GCGGGTTTTCTTCGGCTGCGCATTTTTCCAATGCCTATCGGGAGCGGTTCGGCGTCACGCCGCGGGAGGATCGGCGCGCG
TGGCTCGAGAAGCAGCATGGGGGCGTCGAGCCGCCTCGGGCGGGGGCGATGGTCGAGCGGCCCTCCGGGCGGGAGTGA

Upstream 100 bases:

>100_bases
CGCGCCCGCCGACGTGTTCGGCGCCACGAAGAGCGAGCGCCTGAAGCAGTTCCTGTCGGGCAGCCTCAAGTAACGGCCGA
CGCGGCAGGCCGTGACGTCC

Downstream 100 bases:

>100_bases
GGGGGGCTTTTGGGCCTCTTTGTCCGTTTTTTTCGGGGGTTTTTTCGTGGATGGCCTGTGATGTCAGTGGTCGGTTGGCG
TCGCCCCTCCCCGGGGCGGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNRPSSPARTIQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRAVPLAGGAQWHAHAAFNDAIVCDWL
IVVSERFQQFADYRLFLASLARVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRD
RATCAGGQASVDFMLAMIGRDQGPELAERIADALGTGPLRSGEARQRIPFVTAPGERHPRLNDALLLMEANIEDPLTTDE
IAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPREDRRA
WLEKQHGGVEPPRAGAMVERPSGRE

Sequences:

>Translated_345_residues
MNRPSSPARTIQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRAVPLAGGAQWHAHAAFNDAIVCDWL
IVVSERFQQFADYRLFLASLARVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRD
RATCAGGQASVDFMLAMIGRDQGPELAERIADALGTGPLRSGEARQRIPFVTAPGERHPRLNDALLLMEANIEDPLTTDE
IAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPREDRRA
WLEKQHGGVEPPRAGAMVERPSGRE
>Mature_345_residues
MNRPSSPARTIQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRAVPLAGGAQWHAHAAFNDAIVCDWL
IVVSERFQQFADYRLFLASLARVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRD
RATCAGGQASVDFMLAMIGRDQGPELAERIADALGTGPLRSGEARQRIPFVTAPGERHPRLNDALLLMEANIEDPLTTDE
IAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPREDRRA
WLEKQHGGVEPPRAGAMVERPSGRE

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=101, Percent_Identity=36.6336633663366, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38424; Mature: 38424

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRPSSPARTIQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRAVPLA
CCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECC
GGAQWHAHAAFNDAIVCDWLIVVSERFQQFADYRLFLASLARVGQRTPLVTGIHHGVWWL
CCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQASVDFMLAMIGR
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCC
DQGPELAERIADALGTGPLRSGEARQRIPFVTAPGERHPRLNDALLLMEANIEDPLTTDE
CCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHHH
IAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCCHHH
HFSNAYRERFGVTPREDRRAWLEKQHGGVEPPRAGAMVERPSGRE
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MNRPSSPARTIQVAIVALPPVSMSGVGPIVDALNLANEIDGRLLYRWQVCSWDGRAVPLA
CCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECC
GGAQWHAHAAFNDAIVCDWLIVVSERFQQFADYRLFLASLARVGQRTPLVTGIHHGVWWL
CCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQASVDFMLAMIGR
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCC
DQGPELAERIADALGTGPLRSGEARQRIPFVTAPGERHPRLNDALLLMEANIEDPLTTDE
CCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHHH
IAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCCHHH
HFSNAYRERFGVTPREDRRAWLEKQHGGVEPPRAGAMVERPSGRE
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]