| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454966
Identifier: 126454966
GI number: 126454966
Start: 1588341
End: 1589306
Strand: Direct
Name: 126454966
Synonym: BURPS1106A_1638
Alternate gene names: NA
Gene position: 1588341-1589306 (Clockwise)
Preceding gene: 126453255
Following gene: 126452082
Centisome position: 39.82
GC content: 68.63
Gene sequence:
>966_bases ATGACGCCATTCCGACTATTCTTCGTGCGCATCGCGGCGACGCTCGCGCTCGGTCTCTTTTCGGCGCTGCATGCGCACGC GACGTGCTCGGTCGTGAGCGCGGCCGCCGCGTCGTTCGGCACGGTCACGTCGTTCGCCGTCGCGCGTCAGCCGCAATCGA CTTCGACGACGAGCAGCGGGCTGTCGTGTTCGGGCGCGCTGCTCGGCCTCTTCGTGATCGGTGACCAGATCAACGCGTCG ATCACGTCGGCCAACGGCGGCAAGCTCGTCGGCCCGACGGGCGACGCGGTGCCGTACACGGTGTTCGCCGACCAGAACTA TTCGATCAAGCTCGATCTCGGCGTGACCTACAACTGGGCGAGCGGGCAGTTGCTGAACCTGCTCGGGATTTTCGGCGGCC CCGCGCAGACGCTGCCGATGTATTTCAGAACGGTCCAGGGCAGCAACGTCGCGGCGGGCACCTACACGGACACGCTGACG ATCGCATGGAACTGGGATTACTGCAGCGGCATCGGCGTGCTCGGCATCTGCCTCGGCCGCGACCGGGGCTCGGGCACCGC GGTCGTGCCGGTGACGATCACCGTGACGAACGACTGCATGATCGCCGCGCCCGACGTGAACTTCGGCGCGGCGCCGACGG TCGCGAGCTTCGCGCCGGTGACGGGCAGCGTGTCGCTCACGTGCACGAAGGGGATGGTCTACACGGTGGGCCTGTCGAGC GGCGCGAATCCGCACGCGAGCGGGCGCCGGCAGATGGCCAATGGCGCGAACCGGCTGCAGTACGACATCTTCGGCCCGGG CGCCGCCGCGGTGTGGGGGCAGTCGGCGAACCGCGCGGGCAGCGGCGCGGCGGCCGACGGCCGTTCGGCGCAGCAGTTTC CGTACACCGCGCGCCTCTATCCGGATCAGCCGACGCCCGCGGTTGGAACGTACACGGACAGCGTGATCGTGGATGTGCGC TATTAG
Upstream 100 bases:
>100_bases CGGCCGCACCTGCCGCGCGACGTTCGCAGCCGACGTCGACGCGGCGCAGATGAGCCGCGTCGGCCCGCTCGCGTGCGGCG AATAACGACAGGATTCCTCG
Downstream 100 bases:
>100_bases CCGAAAATCGGCGCGATTCTGCAATCGTTTCGGGCATGCGAGCCGAATCGGACGGGAGAGACGGAGGTGAACGGAAAAGC CGAATCAGTTTTTTCATTTT
Product: putative type 1 pili protein CsuE
Products: NA
Alternate protein names: Spore Coat U Domain Protein; Type I Pili Chaperone-Usher Pili Assembly System); Spore Coat Protein U Domain-Contain Protein; Type 1 Pili Protein CsuE; Type I Pilus Protein CsuE; Spore Coat U; CsuE Protein; Sigma-Fimbriae Tip Adhesin; Fimbrial Adhesin; Fimbrial Protein; Lipoprotein
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MTPFRLFFVRIAATLALGLFSALHAHATCSVVSAAAASFGTVTSFAVARQPQSTSTTSSGLSCSGALLGLFVIGDQINAS ITSANGGKLVGPTGDAVPYTVFADQNYSIKLDLGVTYNWASGQLLNLLGIFGGPAQTLPMYFRTVQGSNVAAGTYTDTLT IAWNWDYCSGIGVLGICLGRDRGSGTAVVPVTITVTNDCMIAAPDVNFGAAPTVASFAPVTGSVSLTCTKGMVYTVGLSS GANPHASGRRQMANGANRLQYDIFGPGAAAVWGQSANRAGSGAAADGRSAQQFPYTARLYPDQPTPAVGTYTDSVIVDVR Y
Sequences:
>Translated_321_residues MTPFRLFFVRIAATLALGLFSALHAHATCSVVSAAAASFGTVTSFAVARQPQSTSTTSSGLSCSGALLGLFVIGDQINAS ITSANGGKLVGPTGDAVPYTVFADQNYSIKLDLGVTYNWASGQLLNLLGIFGGPAQTLPMYFRTVQGSNVAAGTYTDTLT IAWNWDYCSGIGVLGICLGRDRGSGTAVVPVTITVTNDCMIAAPDVNFGAAPTVASFAPVTGSVSLTCTKGMVYTVGLSS GANPHASGRRQMANGANRLQYDIFGPGAAAVWGQSANRAGSGAAADGRSAQQFPYTARLYPDQPTPAVGTYTDSVIVDVR Y >Mature_320_residues TPFRLFFVRIAATLALGLFSALHAHATCSVVSAAAASFGTVTSFAVARQPQSTSTTSSGLSCSGALLGLFVIGDQINASI TSANGGKLVGPTGDAVPYTVFADQNYSIKLDLGVTYNWASGQLLNLLGIFGGPAQTLPMYFRTVQGSNVAAGTYTDTLTI AWNWDYCSGIGVLGICLGRDRGSGTAVVPVTITVTNDCMIAAPDVNFGAAPTVASFAPVTGSVSLTCTKGMVYTVGLSSG ANPHASGRRQMANGANRLQYDIFGPGAAAVWGQSANRAGSGAAADGRSAQQFPYTARLYPDQPTPAVGTYTDSVIVDVRY
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32970; Mature: 32839
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPFRLFFVRIAATLALGLFSALHAHATCSVVSAAAASFGTVTSFAVARQPQSTSTTSSG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC LSCSGALLGLFVIGDQINASITSANGGKLVGPTGDAVPYTVFADQNYSIKLDLGVTYNWA CCCCHHEEEEEEECCCCCEEEEECCCCEEECCCCCCCEEEEEECCCEEEEEEEEEEEECC SGQLLNLLGIFGGPAQTLPMYFRTVQGSNVAAGTYTDTLTIAWNWDYCSGIGVLGICLGR CCHHHHHHHHCCCCHHHCEEEEEEECCCCEEECEEEEEEEEEECCCHHCCCCEEEEEEEC DRGSGTAVVPVTITVTNDCMIAAPDVNFGAAPTVASFAPVTGSVSLTCTKGMVYTVGLSS CCCCCEEEEEEEEEEECCEEEECCCCCCCCCCCHHHCCCCCCCEEEEEECCEEEEEEECC GANPHASGRRQMANGANRLQYDIFGPGAAAVWGQSANRAGSGAAADGRSAQQFPYTARLY CCCCCCCCHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEC PDQPTPAVGTYTDSVIVDVRY CCCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure TPFRLFFVRIAATLALGLFSALHAHATCSVVSAAAASFGTVTSFAVARQPQSTSTTSSG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC LSCSGALLGLFVIGDQINASITSANGGKLVGPTGDAVPYTVFADQNYSIKLDLGVTYNWA CCCCHHEEEEEEECCCCCEEEEECCCCEEECCCCCCCEEEEEECCCEEEEEEEEEEEECC SGQLLNLLGIFGGPAQTLPMYFRTVQGSNVAAGTYTDTLTIAWNWDYCSGIGVLGICLGR CCHHHHHHHHCCCCHHHCEEEEEEECCCCEEECEEEEEEEEEECCCHHCCCCEEEEEEEC DRGSGTAVVPVTITVTNDCMIAAPDVNFGAAPTVASFAPVTGSVSLTCTKGMVYTVGLSS CCCCCEEEEEEEEEEECCEEEECCCCCCCCCCCHHHCCCCCCCEEEEEECCEEEEEEECC GANPHASGRRQMANGANRLQYDIFGPGAAAVWGQSANRAGSGAAADGRSAQQFPYTARLY CCCCCCCCHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEC PDQPTPAVGTYTDSVIVDVRY CCCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA