Click here to switch to the map view.

The map label for this gene is dedA [H]

Identifier: 126454832

GI number: 126454832

Start: 3214217

End: 3214897

Strand: Reverse

Name: dedA [H]

Synonym: BURPS1106A_3296

Alternate gene names: 126454832

Gene position: 3214897-3214217 (Counterclockwise)

Preceding gene: 126451501

Following gene: 126454154

Centisome position: 80.61

GC content: 63.29

Gene sequence:

>681_bases
TTGGAAACGCTGCTTCATTTCGTCAGCCTCGTCGTGCACATCGATGCATTTCTCGGCGATTTCATCCGGCAGTACGGCGC
CTGGGTCTATCTGGTGCTGTTCCTGATCGTTTTCTGCGAAACGGGGCTCGTGATCTTCCCGTTCCTGCCGGGCGATTCGC
TGCTCTTCATCGCGGGCGCGTTCGCGGCGACGGGCGAAATGACGCTTGCGGGCCTCCTCGTGCTGCTGCTCGTCGCGGCG
GTGGGCGGCAATACGGTCAACTATCTGATCGGCCGCGCGATCGGGCCGAAGGTCTTCAATACGCACATTCCGGGGCTCGA
ACGCTTCCTCGACCGCGCCGCGCTGCAGAAGACCCACAATTTCTACGAGCGGCACGGCGGCAAGACGCTCGTGCTCGCGC
GCTTCATCCCGGTCGTGCGCACGTTCGCGCCGTTCGTCGCGGGCGCCTCGGCGATGAGCGTCGCGCGCTTTCAGTTGTTC
AACGTGATCGGCGCGCTGATCTGGGTGCTGCTCCTCGTCTTTCTCGGCTACTTCTTCGGCAACATCCCGTTCATTCGTCA
TTACCTGAACGTGATCGTGCTCGTCGGGATCGGCGCGGCAGTGATCCCCGTCGCGCTCGGCGCGCTATGGAAGCTGCTGC
GCCGCAAGTCGGACGCGCGAAAGACGCAGGCGAATCGCTGA

Upstream 100 bases:

>100_bases
CTTAAGGCACTTTCGGTATCATGACAGCGTTGCTTTTTTGGCTTCCGGCCCTTTGAGGCCGGCGCGCGCTCATCTCGTCA
CCGATACCAAGGAAACGCAT

Downstream 100 bases:

>100_bases
GCGGCGCGCACGGAGCGCCGCCCGTGGGGCGAACCTCGGGCGGCCGTGCGGCGCGCGAGGTCCGGCGCGAAGGATTGCAT
GGCGTGGCGGCGAGCCACGC

Product: DedA family membrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
METLLHFVSLVVHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVIFPFLPGDSLLFIAGAFAATGEMTLAGLLVLLLVAA
VGGNTVNYLIGRAIGPKVFNTHIPGLERFLDRAALQKTHNFYERHGGKTLVLARFIPVVRTFAPFVAGASAMSVARFQLF
NVIGALIWVLLLVFLGYFFGNIPFIRHYLNVIVLVGIGAAVIPVALGALWKLLRRKSDARKTQANR

Sequences:

>Translated_226_residues
METLLHFVSLVVHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVIFPFLPGDSLLFIAGAFAATGEMTLAGLLVLLLVAA
VGGNTVNYLIGRAIGPKVFNTHIPGLERFLDRAALQKTHNFYERHGGKTLVLARFIPVVRTFAPFVAGASAMSVARFQLF
NVIGALIWVLLLVFLGYFFGNIPFIRHYLNVIVLVGIGAAVIPVALGALWKLLRRKSDARKTQANR
>Mature_226_residues
METLLHFVSLVVHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVIFPFLPGDSLLFIAGAFAATGEMTLAGLLVLLLVAA
VGGNTVNYLIGRAIGPKVFNTHIPGLERFLDRAALQKTHNFYERHGGKTLVLARFIPVVRTFAPFVAGASAMSVARFQLF
NVIGALIWVLLLVFLGYFFGNIPFIRHYLNVIVLVGIGAAVIPVALGALWKLLRRKSDARKTQANR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=205, Percent_Identity=50.2439024390244, Blast_Score=212, Evalue=1e-56,
Organism=Escherichia coli, GI1789481, Length=169, Percent_Identity=39.0532544378698, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1789384, Length=166, Percent_Identity=36.7469879518072, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24860; Mature: 24860

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLLHFVSLVVHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVIFPFLPGDSLLFIAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
FAATGEMTLAGLLVLLLVAAVGGNTVNYLIGRAIGPKVFNTHIPGLERFLDRAALQKTHN
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
FYERHGGKTLVLARFIPVVRTFAPFVAGASAMSVARFQLFNVIGALIWVLLLVFLGYFFG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRHYLNVIVLVGIGAAVIPVALGALWKLLRRKSDARKTQANR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
METLLHFVSLVVHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVIFPFLPGDSLLFIAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
FAATGEMTLAGLLVLLLVAAVGGNTVNYLIGRAIGPKVFNTHIPGLERFLDRAALQKTHN
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
FYERHGGKTLVLARFIPVVRTFAPFVAGASAMSVARFQLFNVIGALIWVLLLVFLGYFFG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRHYLNVIVLVGIGAAVIPVALGALWKLLRRKSDARKTQANR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]