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The map label for this gene is 126454684

Identifier: 126454684

GI number: 126454684

Start: 1970243

End: 1971466

Strand: Direct

Name: 126454684

Synonym: BURPS1106A_2009

Alternate gene names: NA

Gene position: 1970243-1971466 (Clockwise)

Preceding gene: 126451847

Following gene: 126453464

Centisome position: 49.4

GC content: 68.71

Gene sequence:

>1224_bases
ATGTCGGCTCGCGCGGCCCGGCAGCTTCCCGGCAACCGCCGGCTCGCGCGCCTCGCCGGCGCCGCCGCCGCGGCATGCGC
CGCCGGCTTCGGCGCGAGCACGGCTCACGCGCAAAGCAGCGTCGTGCTGTACGGCCTGATCGATACGTCGATCACCTACG
CGAACAACCAGCGCACCCACGGAGCCGGCTCGCCGGGAAGCCCCGGCTGGGCCGTGACGAGCGGCGCGCTCAATGCGTCA
CGCTGGGGATTGCGCGGCCGCGAAGACCTCGGCGACGGCGTGTCGGCGATCTTCGCGCTCGAGAACGGCTTCTCGGGGGC
GAGCGGCGCGCTATCGCAAAAGGGCGTCGACATGTTCGGCCGGCAGGCATGGATCGGACTGAAATCGAAGGAAGGGGGCG
CGCTCACGCTCGGCCGCCAGTACGACCTCATCCTGGATTTCGTCACGCCGCTCGGCGCGTCGGGGCCCGGCTGGGGCGGC
AACCTCGCCGTTCACCCGTACGACAACGACGACTCGAACCGCAACATCCGCATCAACAACGCGGTCAAGTACACGAGCCC
GACATACCGCGGATGGACCCTCGGCGCAATGTACGGCTTCTCGAACACGGCGGGCCCGTTCGGCAACAACGCGGCGTGGA
GCGCGGGCCTGTCCTATGCGAACGGCCCGCTGAAACTCGGCGCCGGCTATCTGAGAATCAATCGGAATCCGAACGCCGCG
AACGCGAACGGCGCGCTGAGCACGACGGACGGCTCGGCGACGATCACGGGCGGCAGCCAGCAGATCTGGGCCGTCGCGGG
CCGCTATGCGTTCGGGCCGCATTCGATCGGCGCCGCGTGGTCCCATTCGGCCACCGACCGCGTGAGCGGCGTGCTCCAGG
GCGGCAGCATCGCGAAGCTCGACGGCAATTCGCTCGTCTTCGACAATTTCACGCTCGACGGGCGCTACGTCGTCACGCCG
AGGTTGAGCCTCGCGGCGGCGTACACGTACACGATGGGCCGCTTCGACGCGCGCTCGGGCGAAACCCGTCCGAAGTGGAA
TCACATGGTCGCGCAAGCCGATTACGCGTTCTCGATCCGCACGGACGCGTATCTCGAGGCCGTCTATCAGCGCGTGAGCG
GCGGCAACGGCATTCCGGCGTTCAACGCGACGATCTGGACGCTGACGCCGTCCGCGAACGGCAATCAGGTCGTTGTCGCG
CTGGGGCTGCGGCATCGGTTCTAG

Upstream 100 bases:

>100_bases
CTCCGTCCGCCAATCGGCGCCCGGGCACGCACCGCCAATCGCGCCCGCCAACATAACAATTAATATGGATAACCAACGAC
ACAAGACCCTCCGCTCCGGG

Downstream 100 bases:

>100_bases
GCGGCGCGCGGCAGGCGAGGGCGGCCGGCCGGCTCGGCGCGCGCGACTCGGCGGTCGCCGCCTCGCGCGCTCATGTGGCT
CGGCGCGGCGCTCCGACGGC

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNAS
RWGLRGREDLGDGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGG
NLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLSYANGPLKLGAGYLRINRNPNAA
NANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRYVVTP
RLSLAAAYTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLEAVYQRVSGGNGIPAFNATIWTLTPSANGNQVVVA
LGLRHRF

Sequences:

>Translated_407_residues
MSARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNAS
RWGLRGREDLGDGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGG
NLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLSYANGPLKLGAGYLRINRNPNAA
NANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRYVVTP
RLSLAAAYTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLEAVYQRVSGGNGIPAFNATIWTLTPSANGNQVVVA
LGLRHRF
>Mature_406_residues
SARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNASR
WGLRGREDLGDGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGGN
LAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLSYANGPLKLGAGYLRINRNPNAAN
ANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRYVVTPR
LSLAAAYTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLEAVYQRVSGGNGIPAFNATIWTLTPSANGNQVVVAL
GLRHRF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42496; Mature: 42364

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLYGLIDTSITYANNQRTH
CCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECEEEECCCCCCC
GAGSPGSPGWAVTSGALNASRWGLRGREDLGDGVSAIFALENGFSGASGALSQKGVDMFG
CCCCCCCCCCEEECCCCCHHHCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHC
RQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGGNLAVHPYDNDDSNRNIRINN
CEEEEEEECCCCCEEEECCCCEEEHEEHHHCCCCCCCCCCCEEEECCCCCCCCCEEEECC
AVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLSYANGPLKLGAGYLRINRNPNAA
EEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCEEECCEEEEEECCCCCC
NANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSIGAAWSHSATDRVSGVLQGGSIAKL
CCCCCEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHEECCCCEEEE
DGNSLVFDNFTLDGRYVVTPRLSLAAAYTYTMGRFDARSGETRPKWNHMVAQADYAFSIR
CCCEEEEECEEECCEEEECCCCEEEEEEEEEECCEECCCCCCCCCHHHEEEECCEEEEEC
TDAYLEAVYQRVSGGNGIPAFNATIWTLTPSANGNQVVVALGLRHRF
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SARAARQLPGNRRLARLAGAAAAACAAGFGASTAHAQSSVVLYGLIDTSITYANNQRTH
CCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECEEEECCCCCCC
GAGSPGSPGWAVTSGALNASRWGLRGREDLGDGVSAIFALENGFSGASGALSQKGVDMFG
CCCCCCCCCCEEECCCCCHHHCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHC
RQAWIGLKSKEGGALTLGRQYDLILDFVTPLGASGPGWGGNLAVHPYDNDDSNRNIRINN
CEEEEEEECCCCCEEEECCCCEEEHEEHHHCCCCCCCCCCCEEEECCCCCCCCCEEEECC
AVKYTSPTYRGWTLGAMYGFSNTAGPFGNNAAWSAGLSYANGPLKLGAGYLRINRNPNAA
EEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCEEECCEEEEEECCCCCC
NANGALSTTDGSATITGGSQQIWAVAGRYAFGPHSIGAAWSHSATDRVSGVLQGGSIAKL
CCCCCEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHEECCCCEEEE
DGNSLVFDNFTLDGRYVVTPRLSLAAAYTYTMGRFDARSGETRPKWNHMVAQADYAFSIR
CCCEEEEECEEECCEEEECCCCEEEEEEEEEECCEECCCCCCCCCHHHEEEECCEEEEEC
TDAYLEAVYQRVSGGNGIPAFNATIWTLTPSANGNQVVVALGLRHRF
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]