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The map label for this gene is stc [H]

Identifier: 126454635

GI number: 126454635

Start: 1758874

End: 1760265

Strand: Direct

Name: stc [H]

Synonym: BURPS1106A_1797

Alternate gene names: 126454635

Gene position: 1758874-1760265 (Clockwise)

Preceding gene: 126451635

Following gene: 126454683

Centisome position: 44.1

GC content: 66.81

Gene sequence:

>1392_bases
ATGAGAAACACGAACGCAATCGAAGGGCTCGATCTGTACGTCTGGGAGGGCAAGGCCGATATCGTCGACCGGGTCGCGCG
CTGCATGTCGAGCTTCGACGTCGAAGTGATCCGCGCGGACAACGAGGAACTGTCGGCCGAACGAACCGCGATGCGGCCGT
CGCTCGCGATCATCAGCGTGTCGATGATCGAGAGCGGCGCGGCATTCCTGCGCACCTGGCAGGCGGAGATCGGCATGCCG
GTGGTCTGGGTCGGCGCCGCGCGCGATCACGATCCGTCGCTGTATCCGCCCGAGTATTCGCACATCCTGCCGCTCGATTT
CACGTGCGCGGAGCTGCGTGGCATGATCTCGAAGCTCGCGGTGCAGTTGCGCGCGCACGCGGCGAAGGCGCTCGAGCCGA
GCACGCTCGTCGCGCACTCGGATTGCATGCAGGCGCTGTTGCAGGAAGTCGACACGTTCGCCGACTGCGACACGAACGTG
CTGCTGCACGGCGAGACGGGCGTCGGCAAGGAACGGATCGCGCAGCTGCTGCACGAGAAGCACTCGCGCTACGGCATGGG
CGAGTTCGTGCCGGTGAACTGCGGCGCGATTCCGGACGGACTGTTCGAGTCGCTCTTCTTCGGCCACGCGAAGGGCTCGT
TCACGGGCGCGGTCGGCACGCACAAGGGCTACTTCGAGCAGGCGGCGGGCGGCACGCTGTTTCTCGACGAAGTGGGCGAT
CTGCCGCTCTACCAGCAGGTGAAGCTGCTGCGCGTGCTCGAGGACGGCGCGGTGCTGCGCATCGGCGCGACCGCGCCCGT
CAAGGTGGATTTCCGGCTCGTCGCGGCGAGCAACAAGAAACTGCCGCAGCTCGTGAAGGACGGCCTGTTCCGCGCGGACC
TATACTACCGGCTCGCGGTGATCGAGTTGAGCATTCCGTCGCTCGAGGAGCGCGGGCCCGTCGACAAGATCGCGCTGTTC
AAGTCGTTCGTCGCGTCGATCGTCGGCGAGGATCGGCTCGCCGCGCTGCCGGAGCTGCCTTACTGGCTCGCCGAGGCCGT
CGCCGATTCGTACTTCCCGGGCAACGTGCGCGAGCTGCGCAACCTGGCCGAGCGCGTCGGCGTGACGGTGCGGCAGACGG
GCGGCTGGGATACCGCGCGGCTGCAGCGGCTCATCGCGCACGCACGCAGCGCCGCGCAGCCGGCGCCGGCGGAGAGCGCG
CCCGACGTGTTCGTCGATCGCAGCAAATGGGACATGACCGAGCGCAATCGCGTGATCGCCGCGCTTGACGCCAACGGTTG
GCGTCGGCAGGATACCGCGCAGCATCTCGGAATCAGCCGCAAGGTGCTGTGGGAAAAGATGCGCAAGTATCAGATTTTCG
ACGAGGAGCCTGAGGCGCGGGAAAGCGAATGA

Upstream 100 bases:

>100_bases
TTGAACCTGCTCGGCGTGCAGCTCGGCGCGGCGACGGTTCACAATCTGGCGCTGACCTGCGGCACCGCGCAAACGGTCTA
TTGAAGATTCACGCATAACG

Downstream 100 bases:

>100_bases
AAGCAGGCGGCGAGCCGGCCGACGAACAGGCATTCGAAAAACTACAACACATCGAAGCAGGAAAAAAACGGAATGAGCCA
CATACGGGGAATGGGGCGCG

Product: sigma-54 interaction domain/Fis family transcriptional regulator domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQAEIGMP
VVWVGAARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNV
LLHGETGVGKERIAQLLHEKHSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGD
LPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALF
KSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLIAHARSAAQPAPAESA
PDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE

Sequences:

>Translated_463_residues
MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQAEIGMP
VVWVGAARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNV
LLHGETGVGKERIAQLLHEKHSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGD
LPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALF
KSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLIAHARSAAQPAPAESA
PDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE
>Mature_463_residues
MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQAEIGMP
VVWVGAARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNV
LLHGETGVGKERIAQLLHEKHSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGD
LPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALF
KSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLIAHARSAAQPAPAESA
PDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE

Specific function: Required For Induction Of Expression Of The Hydrogenase- 4 Structural Genes. [C]

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=342, Percent_Identity=38.0116959064327, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI1788550, Length=361, Percent_Identity=35.1800554016621, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1790437, Length=354, Percent_Identity=35.3107344632768, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1790299, Length=404, Percent_Identity=33.6633663366337, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1789087, Length=237, Percent_Identity=42.6160337552743, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87081872, Length=325, Percent_Identity=35.0769230769231, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1786524, Length=334, Percent_Identity=37.125748502994, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1789233, Length=324, Percent_Identity=33.9506172839506, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI87082152, Length=254, Percent_Identity=40.1574803149606, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1788905, Length=230, Percent_Identity=40, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1787583, Length=350, Percent_Identity=33.7142857142857, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789828, Length=205, Percent_Identity=36.5853658536585, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87081858, Length=301, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 51287; Mature: 51287

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEELSAERTAMRPSLAIISV
CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCHHEEEH
SMIESGAAFLRTWQAEIGMPVVWVGAARDHDPSLYPPEYSHILPLDFTCAELRGMISKLA
HHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
HSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGD
HHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCC
LPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAV
CCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEECCCCCCHHHHHCCCHHHHHEEEEEE
IELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELR
EEEECCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
NLAERVGVTVRQTGGWDTARLQRLIAHARSAAQPAPAESAPDVFVDRSKWDMTERNRVIA
HHHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEEE
ALDANGWRRQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE
EECCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRNTNAIEGLDLYVWEGKADIVDRVARCMSSFDVEVIRADNEELSAERTAMRPSLAIISV
CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCHHEEEH
SMIESGAAFLRTWQAEIGMPVVWVGAARDHDPSLYPPEYSHILPLDFTCAELRGMISKLA
HHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VQLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
HSRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGD
HHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCC
LPLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAV
CCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEECCCCCCHHHHHCCCHHHHHEEEEEE
IELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELR
EEEECCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
NLAERVGVTVRQTGGWDTARLQRLIAHARSAAQPAPAESAPDVFVDRSKWDMTERNRVIA
HHHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEEE
ALDANGWRRQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE
EECCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA