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The map label for this gene is cyt [H]

Identifier: 126454574

GI number: 126454574

Start: 3806695

End: 3807060

Strand: Reverse

Name: cyt [H]

Synonym: BURPS1106A_3897

Alternate gene names: 126454574

Gene position: 3807060-3806695 (Counterclockwise)

Preceding gene: 126451459

Following gene: 126455017

Centisome position: 95.45

GC content: 69.4

Gene sequence:

>366_bases
GTGACGATTGCGAAGCGCGTGAAACGGACGATGAGCGCAGCGGCCGCCGCGATGGCGGTGGTGAGCTGCGCGATGGCGGC
CACGCCGGCGGCGCATGCGGATGCCGGCGATGGGCTGAAGGTCGCGCGCAGCAACGCGTGCATGGGTTGCCACGCGGTGG
ACCGGAAGCTCGTCGGCCCATCGTTCCAGCAGATCGCCGAGCGGTACAAGAACGACAAGCAGGCGGAGCCGAAGCTCGCG
AAGAAGGTGAAGGATGGCGGCTCCGGCGTGTGGGGCGCGATCCCGATGCCCGCGCACCCGCGGATGAGCGATGCCGACGT
GCGCTCGGTCGTTCAGTGGGTGTTGGCCGGCGCGCCGTCGAAATAG

Upstream 100 bases:

>100_bases
CGGTGCCGGATTCGAGCGTCACCGCGACACCGCTATCGGCGCCGGCGCCGGTTTCCAATTCGTCGAACGTGCATCCGGGC
AATCCGAAGGCGGGGACGCC

Downstream 100 bases:

>100_bases
CCGATCGGCGCAAATCTATTGCCAAGCGCGGATGATGTGATGTATAATCGTCGGCTGTTGGTGAGGGGCGGTAGCTCAGC
TGGGAGAGCGTCGCGTTCGC

Product: cytochrome c family protein

Products: NA

Alternate protein names: Cytochrome c-551; Cytochrome c552 [H]

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MTIAKRVKRTMSAAAAAMAVVSCAMAATPAAHADAGDGLKVARSNACMGCHAVDRKLVGPSFQQIAERYKNDKQAEPKLA
KKVKDGGSGVWGAIPMPAHPRMSDADVRSVVQWVLAGAPSK

Sequences:

>Translated_121_residues
MTIAKRVKRTMSAAAAAMAVVSCAMAATPAAHADAGDGLKVARSNACMGCHAVDRKLVGPSFQQIAERYKNDKQAEPKLA
KKVKDGGSGVWGAIPMPAHPRMSDADVRSVVQWVLAGAPSK
>Mature_120_residues
TIAKRVKRTMSAAAAAMAVVSCAMAATPAAHADAGDGLKVARSNACMGCHAVDRKLVGPSFQQIAERYKNDKQAEPKLAK
KVKDGGSGVWGAIPMPAHPRMSDADVRSVVQWVLAGAPSK

Specific function: Monoheme c-type cytochrome. Probable electron donor to membrane cytochrome oxidase and to periplasmic nitrite reductase [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12600; Mature: 12469

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAKRVKRTMSAAAAAMAVVSCAMAATPAAHADAGDGLKVARSNACMGCHAVDRKLVGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCC
SFQQIAERYKNDKQAEPKLAKKVKDGGSGVWGAIPMPAHPRMSDADVRSVVQWVLAGAPS
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
K
C
>Mature Secondary Structure 
TIAKRVKRTMSAAAAAMAVVSCAMAATPAAHADAGDGLKVARSNACMGCHAVDRKLVGP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCC
SFQQIAERYKNDKQAEPKLAKKVKDGGSGVWGAIPMPAHPRMSDADVRSVVQWVLAGAPS
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746537; 12700255 [H]