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The map label for this gene is ihfA [H]

Identifier: 126454482

GI number: 126454482

Start: 1701378

End: 1701782

Strand: Direct

Name: ihfA [H]

Synonym: BURPS1106A_1741

Alternate gene names: 126454482

Gene position: 1701378-1701782 (Clockwise)

Preceding gene: 126453391

Following gene: 126453766

Centisome position: 42.66

GC content: 64.69

Gene sequence:

>405_bases
ATGAACGACATGAACTCGAGTGAATTTGAAGCCCTTCTGACGGCGCAGCGCAGCGCCATGGCCCGCGACGTCCCGGCGTC
CACGTCCGCCGGCGATACGCCGACGCTGACGAAGGCCGAGCTGGCCGAACTGCTGTTCGACAGCGTCGGCCTCAACAAGC
GCGAGGCGAAGGACATGGTCGAGGCGTTTTTCGAGGTGATCCGCGATGCGCTCGAAAACGGCGAGAGCGTGAAGCTGTCG
GGCTTCGGCAATTTCCAGCTGCGCGACAAGCCGCAGCGGCCGGGGCGCAATCCGAAGACGGGCGAGGCGATTCCGATCGC
CGCGCGCCGTGTCGTGACGTTCCATGCGAGCCAGAAATTGAAGGCGCTCGTCGAAAACGGCGCCGAGCCGGATCTCGCGC
GTTAA

Upstream 100 bases:

>100_bases
AGTCTATGGCGCGCGTTTGCGCGGATAGGGCGCAAAAGCGGCGGAAACCGCCGCTTTTGCCGGTGTTTTTGTCCAAGTTT
GACGCGCTGGTTTTGCAGAT

Downstream 100 bases:

>100_bases
GCCGGCGTTTCGCCTCCTGCGCGCGGCGCCCGCGCCTCTTACCGACGGTTAACTGACGATGACGTCGACGGTTGAGAAAG
TCGTGTTGCCCCCGATTCCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNDMNSSEFEALLTAQRSAMARDVPASTSAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR

Sequences:

>Translated_134_residues
MNDMNSSEFEALLTAQRSAMARDVPASTSAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR
>Mature_134_residues
MNDMNSSEFEALLTAQRSAMARDVPASTSAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=72.9166666666667, Blast_Score=142, Evalue=6e-36,
Organism=Escherichia coli, GI1790433, Length=86, Percent_Identity=36.046511627907, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 14590; Mature: 14590

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMNSSEFEALLTAQRSAMARDVPASTSAGDTPTLTKAELAELLFDSVGLNKREAKDMV
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KALVENGAEPDLAR
HHHHHCCCCCCCCC
>Mature Secondary Structure
MNDMNSSEFEALLTAQRSAMARDVPASTSAGDTPTLTKAELAELLFDSVGLNKREAKDMV
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KALVENGAEPDLAR
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA