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The map label for this gene is ccsB [H]

Identifier: 126454376

GI number: 126454376

Start: 3683293

End: 3685449

Strand: Reverse

Name: ccsB [H]

Synonym: BURPS1106A_3771

Alternate gene names: 126454376

Gene position: 3685449-3683293 (Counterclockwise)

Preceding gene: 126455317

Following gene: 126453509

Centisome position: 92.4

GC content: 66.39

Gene sequence:

>2157_bases
TTGCAGTCGAGAACGGGACCGTCCGCGGTCAGGCGCGCGGTCGAGCTGTTGAGCTCGATGCGATTTGCGATCGCGCTGCT
CGTCGTCCTGTCGATCGCGAGCATCATCGGCACGGTTCTCACGCAGGACGATCCGTACCCTAACTACGTCAATCAGTTCG
GCCCGTTCTGGGCCGACATCTTCCGCTCGCTGAGCCTCTATACGGTCTACAGCGCGTGGTGGTTCATGCTGATCCTGATC
TTCCTCGTCGTGTCGATCTCGCTGTGCGTGATCCGCAACGCGCCGAAGATGCTCGCCGACGCGAAGAGCTGGAAGGACAA
GGTCCGCGAAGGCAGCCTGCGCGCGTTTCATCACAAGGCGGAGTTCGCGGTCGCGGGCGATCGCGCGCGCGCGACGCAGA
CCGTCGCCGCGTTCGTCGCGAAGGCGGGCTATCGGCATGTCGTGCGCGAAGCGGGCGGCGCGACGCTCGTCGCCGCGAAG
CGCGGCGCGATGACGAAGTTCGGCTACATCGCCGCGCACCTCGCGATCGTCGTGATCTGCGTGGGCGGTCTGCTCGACAG
CAACCTGCCGATCAAATTCCAGATGTGGATGTTCGGCAAGAGCCCCGTCAACACGAGCGCGACGATCAGCGAGATCGGAG
CCGAGCACCGGCTGTCCGCGTCGAATCCGACGTTCCGCGGCTACGCGTGGGTGCCGGAGGGCCAGTATGTATCGACGGCG
ATCCTCAATCAGCCGACGGGCTCGCTGATCCAGGATCTGCCGTTCTCGATCCAGCTCGAGAAATTCATCGTCGACTATTA
CTCGACCGGCATGCCGAAGCTCTTCGCGAGCGACATCGTCGTCGTCGATCGCGAGACGGGCAAGCGGATTCCGGCGCGCG
TCGAGGTCAACAAGCCGTTCACGTACAAGGGCGTGTCGATCTATCAATCGAGTTTCCAGGACGGCGGCTCGCTGATGGAA
ATGACCGCGTATCCGATGACGGGCGCGAGCGCCGCGACGTTCCCGTTCAAGGGCACGATCGGCAATTCGGTGCCGCTCGC
GGCGGCGGGCGCCGACGGCGAGACCGTCGAGTTCTCCGATTTCCGTGCGATCAACGTCGAGAACGTCACCGACGCGAACG
GCAAGACCGACGCGCGCGGCGTCGCGGCGAACCGCTCGATCAAGGAACTCTTCGACGAGCGGCTCGGCTCCGGCGCGAAG
ACGTCGAAGCCCGTCGAACTGCACAACATCGGGCCTTCGGTTCAGTACAAGGTGCGCGGCAAGGACGGCCAGGCGCGCGA
ATTCAACAACTACATGCTGCCCGTCGACATGGGCGGCGAGCGCGTGTTCCTCGCGGGCGTGCGCGCGAGCCCGAACGACC
CGTTCCGCTATCTGCGGATTCCGGCCGACAGCCGCGACAGCGTCGGCGAATGGATGCGGCTGCGCGCGGCGCTCGAAGAT
CCGGCCGTGCGCATCGAGGCGGCGCGCCGCTTCGCGCGGCATTCGCTCGGCACGGGCGATGCCGCGCTGCGCGACCGGCT
CGAGGACAGCGCGCAGCGCGTCCTGACCCTGTTCGCCGGCGCGGACGGCAGCATCGGCCGTGGCGCGGACGGCAATCCGA
TCGGCGGCTTCCAGTCGGTCGCGACGTTCATCGACCGCTCGGTGCCGAAGGACGAGAAGGAGAAGGCCGCCGCCTTGCTG
CTGCGGATGCTCGAGGGTTCGATGTGGGAGGTTTGGCAAATCGCGCGCGAACGCGCGGGCGAGCCGCCCGTCCAGCAGGC
GCAGGATACGGTGCGCTTCGTGCAGAACGCGATCAACGCGCTGTCGGACAGTTTCCTGTACGGCGCGCCGGTTTATCTGC
AGCTCGATTCGTTCAAGCAGGTGCAGGCGTCGGTGTTCCAGCTGACGCGCGCGCCGGGCAAGAATCTGGTGTATCTTGGC
AGCCTGCTGCTCGTCGCCGGCATCTTCGCGATGTTCTACGTGCGCGAGCGACGCCTCTGGTTCTGGCTCAAGGATACGGG
CGCGGGCGTCAGCGTGCTGATGGCGATGTCCACCGCGCGCAAGACGTTCGACTTCGAAAAGGAATTCGTGCAGACGCGCG
ACGCGGCCGGGGCCGCCCTCGGCGCGCCGGCCTTCCGCGCGCCCGACGGCGCCGGCACCAAGGACTCGACTCGGTAA

Upstream 100 bases:

>100_bases
GGCCGCTAGAACAAGAAAAGGGTGGGGCGCCGTCGAAGTACGGCCGCCTTGCCCTTTTTTGCTGTGAGTTGGAGTTTGAA
TGAGCGTTACCACGTCGGGG

Downstream 100 bases:

>100_bases
CATCATGGATCTGACCCAAGTTTCGTCTTCCCGCGCGCGGCGCGCTTCCGGCGCGGCTGCGCCGCTGCTCTTCGACGAGC
GGCCGTTCCTGCGGCGGCTG

Product: putative cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MQSRTGPSAVRRAVELLSSMRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILI
FLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAK
RGAMTKFGYIAAHLAIVVICVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTA
ILNQPTGSLIQDLPFSIQLEKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFTYKGVSIYQSSFQDGGSLME
MTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDERLGSGAK
TSKPVELHNIGPSVQYKVRGKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALED
PAVRIEAARRFARHSLGTGDAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALL
LRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLG
SLLLVAGIFAMFYVRERRLWFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR

Sequences:

>Translated_718_residues
MQSRTGPSAVRRAVELLSSMRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILI
FLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAK
RGAMTKFGYIAAHLAIVVICVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTA
ILNQPTGSLIQDLPFSIQLEKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFTYKGVSIYQSSFQDGGSLME
MTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDERLGSGAK
TSKPVELHNIGPSVQYKVRGKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALED
PAVRIEAARRFARHSLGTGDAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALL
LRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLG
SLLLVAGIFAMFYVRERRLWFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
>Mature_718_residues
MQSRTGPSAVRRAVELLSSMRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILI
FLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAK
RGAMTKFGYIAAHLAIVVICVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTA
ILNQPTGSLIQDLPFSIQLEKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFTYKGVSIYQSSFQDGGSLME
MTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDERLGSGAK
TSKPVELHNIGPSVQYKVRGKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALED
PAVRIEAARRFARHSLGTGDAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALL
LRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLG
SLLLVAGIFAMFYVRERRLWFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 78421; Mature: 78421

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRTGPSAVRRAVELLSSMRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHH
FRSLSLYTVYSAWWFMLILIFLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHC
EFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVIC
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTA
HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHCHHHCCCCCCCCCCEEEECCCCCEEHHH
ILNQPTGSLIQDLPFSIQLEKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPF
HHCCCCHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCEEECCCCC
TYKGVSIYQSSFQDGGSLMEMTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSD
EECCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECC
FRAINVENVTDANGKTDARGVAANRSIKELFDERLGSGAKTSKPVELHNIGPSVQYKVRG
EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEC
KDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALED
CCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
PAVRIEAARRFARHSLGTGDAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSV
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
ATFIDRSVPKDEKEKAAALLLRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINA
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRLW
HHCCHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEE
FWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQSRTGPSAVRRAVELLSSMRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHH
FRSLSLYTVYSAWWFMLILIFLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHC
EFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVIC
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTA
HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHCHHHCCCCCCCCCCEEEECCCCCEEHHH
ILNQPTGSLIQDLPFSIQLEKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPF
HHCCCCHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCEEECCCCC
TYKGVSIYQSSFQDGGSLMEMTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSD
EECCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECC
FRAINVENVTDANGKTDARGVAANRSIKELFDERLGSGAKTSKPVELHNIGPSVQYKVRG
EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEC
KDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALED
CCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
PAVRIEAARRFARHSLGTGDAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSV
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
ATFIDRSVPKDEKEKAAALLLRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINA
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRLW
HHCCHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEE
FWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA