| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is yjjL [C]
Identifier: 126454349
GI number: 126454349
Start: 1455940
End: 1457232
Strand: Direct
Name: yjjL [C]
Synonym: BURPS1106A_1500
Alternate gene names: 126454349
Gene position: 1455940-1457232 (Clockwise)
Preceding gene: 126451560
Following gene: 126451782
Centisome position: 36.5
GC content: 70.07
Gene sequence:
>1293_bases GTGACGGCGTTTTCGTTTGCGCGCGCCGCCGGTTCGTCGGTCGGCGTCTTACCGGTGATCGTGATGTCCCTCATGCAATT TCGCGTGTTCGCGCTGTTCGCGATCGGCTATTTCGTTTCGTACGTCTTTCGCGGCGTGAATCTCGGCTTCGCGCCGCTCA TCACGCGCGAGCTCGGCCTGTCCGCCGCCGATCTCGGGCTGCTGACGAGCCTTTACTTTCTTGGTTTCGCGTGCGCGCAG ATTCCGGCCGGCGTGCTGCTCGACCGCTACGGCCCGCGTCGCGTGAGCGCCGCGCTTCTGCTCGTCGCGGCGGCGGGCGC GTGGGTGTTCGGCGCCGCGCACGACATCGGCGCGATGATGCTCGGGCGTCTTCTGATCGGCGTCGGCGTGTCGGTGTGCC TGGGCGGCGCGTTCAAGGCGCTCGCGCAGCATTTCCCGGTCGCGAGGCTGCCGCTTCTGAACGGCTTCGTGATGGCGGTG GGCGGGCTGGGCGGCGTCGCGGTCGGCTCGCCGCTCGATTGGCTGCTTGGCTTCGCCGGCTGGCGCGCGGTGTGCGCGGG GCTCGGCGCGTTCACGGTGGCGGTCGCGGCCGCGTTGTGGGCGTTCGCCCCCGATGCGCGGCAGAGCCGTCACGACGCGA GCGTCGCCGCGCAATTCGCGGGCACCTGGCGAATCGTCACGAACCGCACGTTCTGGAAGATCGCGTCGTTTTCGGTCGTC ACGCAGGGCGTGTTCTACGCGATGCAATCGCTGTGGGTCGGCGCGTATCTGCGCGACGTGAGCGGCTTCGCGCCGCGCGA CGCGGCCGTGCTCGTGTCCGTGCTCGGCTTCGCGATGATGGCGGGCTGCGTCGGCTTCGGCGCGGCGGCGCGCGGGCTCG AGCGGCGCGGCATGTCGCTGTATGCGTTCTGCGGGTTCGGGATGGCGCTCTTCGTCGCGACCCAGCTCGCGATCATGCTG CGCGCGCCGCTGCCCGCCGCGGTGCTGTGGGCGGCGTACGGCGTGTTCGGCGGCGTCGGCATCCTGAGCTACGCCGTGCT CGCCGAATATTTCCCCGTGCACGTGATCGGCCGTGCGAACACGACGCTCACGCTCGTCATCTTCGTGCTGATCTTCGGAT TCCAGGTGGGCGTGGGCGCGGTGCTGTCGCATTGGCCGATGCGGGCCGGGCATTATCCGGCCGAGGCGCATTTGAGCGCG TGGGGCGCGCTCGTCGCGCTGCAGATCGCGAGCGCGGTCTGGTACGTGCTGCCCGATCGCGCGCTCGACAAGTCCGCCCG GCACGCGGGGTGA
Upstream 100 bases:
>100_bases GCGACGAAGAAGAAGTAAGACGAAAGGGCGCGCATGCCGCGGGGGCTTTCCTGCCGGCGACGCGCGATCGAGACTATCAT CGCCGGACGCCGTCACCTGG
Downstream 100 bases:
>100_bases TTCGCGTCACGCCCGTCGCGGCGGCGCGCGGGCGTCGGCCGGCCGCGCGCCGCGATCGCCGGCGTGGCGCGGCGACGGGC GTCGGCGCGCGCGTCGCCGT
Product: major facilitator family transporter
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Facilitator Family Transporter; Transporter MFS Superfamily; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MTAFSFARAAGSSVGVLPVIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQ IPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAV GGLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVV TQGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIML RAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSA WGALVALQIASAVWYVLPDRALDKSARHAG
Sequences:
>Translated_430_residues MTAFSFARAAGSSVGVLPVIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQ IPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAV GGLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVV TQGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIML RAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSA WGALVALQIASAVWYVLPDRALDKSARHAG >Mature_429_residues TAFSFARAAGSSVGVLPVIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQI PAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVG GLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVT QGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIMLR APLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAW GALVALQIASAVWYVLPDRALDKSARHAG
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45086; Mature: 44955
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFSFARAAGSSVGVLPVIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGL CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC SAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMM CHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGFAG HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH WRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH TQGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE YAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRAN EHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLPDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH ALDKSARHAG HHCCCCCCCC >Mature Secondary Structure TAFSFARAAGSSVGVLPVIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGL CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC SAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMM CHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGFAG HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH WRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH TQGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE YAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRAN EHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLPDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH ALDKSARHAG HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA