Click here to switch to the map view.

The map label for this gene is dadA

Identifier: 126454310

GI number: 126454310

Start: 2867649

End: 2868935

Strand: Direct

Name: dadA

Synonym: BURPS1106A_2925

Alternate gene names: 126454310

Gene position: 2867649-2868935 (Clockwise)

Preceding gene: 126454014

Following gene: 126453415

Centisome position: 71.9

GC content: 68.07

Gene sequence:

>1287_bases
ATGCGTGTGGTTATTTTGGGCAGTGGCGTGGTCGGCGTGGCGAGCGCCTATTATTTGGCGCGCGCGGGTCACGAAGTCAC
GGTGATCGACCGCGAGGCCGGCCCCGCCCTCGACACCAGCTTTGCGAACGCGGGCCAGATCTCGCCCGGCTACGCGGCGC
CGTGGGCCGCGCCCGGCGTACCGCTGAAGGCCGTCAAATGGATGTTCGAGAAGCATGCGCCGCTCGCGATCCGCCTCGAC
GGCACGCGCTTCCAGCTGCAATGGATGTGGCAAATGCTGCGCAACTGCACGACCGAGCGCTACGCGCTGAACAAGGGCCG
GATGGTGCGCCTCGCCGAATACAGCCGCGATTGCCTGCAGGCGCTGCGCGCGGAGACGGCTATCCAATACGAGGGCCGCA
CGGGCGGCACGCTGCAGGTCTTCCGCACGCAGCAACAGCTCGACGGCGCCGCGAAGGACATCGCGGTGCTGCGCGAAGCG
AACGTGCCGTTCGAGCTGCTGTCGAGCGACGAACTGAAGAAGGCCGAGCCGGCGCTCGCCGCGGTGTCGCACAAGCTGAC
GGGCGGCCTGCGCCTGCCGGGCGACGAAACGGGCGACTGCCAGCTCTTCACGACGCGCCTTGCCGCGCTCGCCGAGCAGC
TCGGCGTGAAGTTCCGCTTCAATACGCGCATCGACGCGCTCGCCGTCGCGGGCGGCAAGATCGCCGGCGTCCAGTGCGGC
GGCGAAATGGTGCGCGCTGACGCTTACGTGGTCGCGCTCGGCTCGTACTCGACGAACCTCGTCGCGAGTCTCGTGAAGAT
TCCGGTGTATCCGCTGAAGGGCTATTCGATCACCGCGCCGATCGTCGACGCGGCGAAGGCGCCCGTGTCGACCGTGCTCG
ACGAAACCTACAAGATCGCGATCACGCGTTTCGACGACCGGATTCGCGTCGGCGGGATGGCGGAGATCGTCGGCTTCGAC
AAGCGGCTGCGCGACGCGCGCCGCGGCACGCTCGAGATGTGCGTCAACGACCTGTTCCCGGGCGGCGGCGATACGGCGAA
GGCGACGTTCTGGACCGGCCTGCGGCCGATGACGCCGGACGGCACGCCGATCGTCGGCCGCACGCCGGTGCCGAACCTGT
TCCTCAACACGGGTCATGGCACGCTCGGCTGGACGATGTCGTGCGGCTCCGGCCAACTGCTCGCTGATCTGATGTCGGGC
AAGAAGCCCGTGATCCGCGCGGACGACCTGTCGGTGCATCGCTATCTGAGCGAGACGGACGGCGAGCATCGCCCCGCATA
CGCATGA

Upstream 100 bases:

>100_bases
CTCAACCATACCATAGCGCAAAAAACTAGGTCGGATCGAGATCGCAGAGCGCATCGGGTGCGCCGCGCGCCGTCCGGCGT
TTTCTCTATCCGGAGCAGCT

Downstream 100 bases:

>100_bases
TGCGCTGACGCGCAACCGAGGCGGCCCGCGCACCACCGCCGCCTCGCCCGCCCAAAAGAAACGGCGCCCTCGGGCGCCGT
TCCGCGTTTGGCCTCCGGCG

Product: D-amino acid dehydrogenase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPVIRADDLSVHRYLSETDGEHRPAYA

Sequences:

>Translated_428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPVIRADDLSVHRYLSETDGEHRPAYA
>Mature_428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPVIRADDLSVHRYLSETDGEHRPAYA

Specific function: Oxidative deamination of D-amino acids

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family

Homologues:

Organism=Escherichia coli, GI1787438, Length=415, Percent_Identity=73.4939759036145, Blast_Score=639, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DADA_BURP0 (A3NXU9)

Other databases:

- EMBL:   CP000572
- RefSeq:   YP_001067170.1
- ProteinModelPortal:   A3NXU9
- STRING:   A3NXU9
- GeneID:   4900001
- GenomeReviews:   CP000572_GR
- KEGG:   bpl:BURPS1106A_2925
- TIGR:   BURPS1106A_2925
- eggNOG:   COG0665
- HOGENOM:   HBG729204
- OMA:   WQMLQNC
- ProtClustDB:   PRK00711
- HAMAP:   MF_01202
- InterPro:   IPR023080
- InterPro:   IPR006076

Pfam domain/function: PF01266 DAO

EC number: =1.4.99.1

Molecular weight: Translated: 46204; Mature: 46204

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGV
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQ
CHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHCCHHHEECCCCCEEEHHHHHHHHHH
ALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREANVPFELLSSDELKKAEPALA
HHHHHHEEEECCCCCCEEEEEECHHHHCCHHHHHHHHHCCCCCHHHCCCCCHHHHCHHHH
AVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
HHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCEEEEEECC
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIA
CCEEECCEEEEEECCCCHHHHHHHHHCCCEECCCCEEECCHHHHHCCCHHHHHCCCEEEE
ITRFDDRIRVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPD
EEEECCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
GTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSGKKPVIRADDLSVHRYLSETD
CCEEECCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHHHHCC
GEHRPAYA
CCCCCCCC
>Mature Secondary Structure
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGV
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQ
CHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHCCHHHEECCCCCEEEHHHHHHHHHH
ALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREANVPFELLSSDELKKAEPALA
HHHHHHEEEECCCCCCEEEEEECHHHHCCHHHHHHHHHCCCCCHHHCCCCCHHHHCHHHH
AVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
HHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCEEEEEECC
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIA
CCEEECCEEEEEECCCCHHHHHHHHHCCCEECCCCEEECCHHHHHCCCHHHHHCCCEEEE
ITRFDDRIRVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPD
EEEECCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
GTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSGKKPVIRADDLSVHRYLSETD
CCEEECCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHHHHCC
GEHRPAYA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA