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The map label for this gene is ydhO [H]

Identifier: 126454270

GI number: 126454270

Start: 2268649

End: 2269863

Strand: Direct

Name: ydhO [H]

Synonym: BURPS1106A_2283

Alternate gene names: 126454270

Gene position: 2268649-2269863 (Clockwise)

Preceding gene: 126454067

Following gene: 126453681

Centisome position: 56.88

GC content: 74.24

Gene sequence:

>1215_bases
ATGTTGCGTCTTTCGCTGTCCGTTCTCGTGATTTCGCTGCTCGCGGCCTGCTCGAGCGTGCCGCCCAAGTCGGCGCGCTC
GTCGTCCGGCATGGCGATTACCACGCCGCGCGCGTACGCGCCGCCGCGCGGCTTTCCGAATTTCGTCGACCATAGCGTCG
GCCGCGAGGAAATCTCGATCCAGGCGATGAGCCTCGTCGGCGTGCCGTACCGTTGGGGCGGCAACACGCCCGACAGCGGC
TTCGACTGCAGCGGGCTCGTGCGCTATGTCGTCGATCGCGCGGCGAGCGTGAATCTGCCCCGCACGACCGCCGACATGAG
CTCGATCGGCGAATCGATCGAGCCCGACGGCATCGCGCCGGGCGATCTGATCTTCTTCAATACGTCGGGGCGGCCGCATT
CGCACGTCGGCATCTACGTCGGCAAGCTGCGCTTCGTGAACGCGCCGTCGACGGGCGGCACCGTGCGGCTCGACTATCTG
ACGAATCCGTATTGGGCGAAGCGCTTCGACGGCATCCGGCGCGTCGCGGCGCCGAAGGCGAAGCCGGCGCCGTTCGATGC
GCCGATCTATCAGGCGAGCCGGCCGCCGGAACCCGCGCCGCGCGTGAGCCCGGCAGCCGCGGCGCCGGCCTATGCGGCAG
TCAATGCGCCGGCGGCGTCCGCCGCACGCGCGGCAGCGCCCTCCGCGCCCGGCTATGCGGCGAACTCGGCGACGCCGGCC
GCGGCACGCGCCGCAGCACCGCCGCCATCGTCCGAATATGCCGCCCACTCCGCCGCTGCGATGGCCTCAGCCCCGGCCTC
GGCCGCGCCGCTACCCACCGCCGTGCCGGCTGCGGCAACCGCCGCAACCGCCGCCGATCCGTACGAGCCGCCGCCGTCCG
CGATGTCCGCCGCGCGCCGGCAAGCGCAGGCTGCCGGCGCGCGTTCGCCCGTGCTCGCGGCCGGCAACCCGGGCGGCGCG
GTGCCGCCGGCCGCGCCGCCCGCCGGCGGTCCGACGAGCATGGCCGGCGCATCGGCGGCCGATCCGATCGACGCCGCCGC
GGACGCGTTCGAGCCGCCGCCGCCCACCGCGCGCGCGGCCGCCCGTCAGGCGCAACTCGCCGCGCCCGGCAACGTGCAGG
TCCTGCGCGCGTCGACAGCCGGCAGCGCCGCAAGCGCCGCCGCAACCGGCTCGAACGACGACCCGATCGCCCGCTTCGCG
AACGGCGGTTATTGA

Upstream 100 bases:

>100_bases
CATTTCTCAGGAATTCTTGCGAAAGCCCCGCTGGACGCACTACTATCGCGATTAACCGTTGTCATACGATTGGCGAGCGC
AGCGCGTTCGCCCGCCTCTC

Downstream 100 bases:

>100_bases
GGCTATCGGAGAAGCGGCAAGCGCCGACACGCCGAAGGCGCCGTACGGACGCGATGGGCCGCGCGATGCACCGCCGCGCG
AATGAAACGCGAAGGGCAAG

Product: NlpC/P60 family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPIYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMASAPASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGA
VPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFA
NGGY

Sequences:

>Translated_404_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPIYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMASAPASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGA
VPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFA
NGGY
>Mature_404_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPIYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMASAPASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGA
VPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFA
NGGY

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=41.8032786885246, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=36.5671641791045, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788501, Length=135, Percent_Identity=35.5555555555556, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=42.0168067226891, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 40179; Mature: 40179

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISI
CEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEE
QAMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAP
EEEHEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
GDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKA
CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
KPAPFDAPIYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCH
AARAAAPPPSSEYAAHSAAAMASAPASAAPLPTAVPAAATAATAADPYEPPPSAMSAARR
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHH
QAQAAGARSPVLAAGNPGGAVPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAA
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHH
ARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANGGY
HHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISI
CEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEE
QAMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAP
EEEHEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
GDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKA
CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
KPAPFDAPIYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCH
AARAAAPPPSSEYAAHSAAAMASAPASAAPLPTAVPAAATAATAADPYEPPPSAMSAARR
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHH
QAQAAGARSPVLAAGNPGGAVPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAA
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHH
ARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANGGY
HHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]