Click here to switch to the map view.

The map label for this gene is potC [C]

Identifier: 126454224

GI number: 126454224

Start: 1389190

End: 1390290

Strand: Reverse

Name: potC [C]

Synonym: BURPS1106A_1415

Alternate gene names: 126454224

Gene position: 1390290-1389190 (Counterclockwise)

Preceding gene: 126451483

Following gene: 126454755

Centisome position: 34.86

GC content: 71.93

Gene sequence:

>1101_bases
ATGCATTCGACGAGGCGCAGAACGACCGACGATCGACGCGCGCGCGACGCCCAGGCGATGTCGCGCCGCGCGGCGCACCT
CGCCTGCGCGCTCCCCGTCGCCGCGCGCGGTGCCGTCATCAGTTCTTCATCGACGCCGCCGATAATCCTCGTCGACGAAA
ACGTTTACATCGCATTGCGCACGCCCATGACGCCTCCCCCGAAGGACGCCGCCGCCCTCGCCCGCCCCGCCGCCGCGGCC
GGCCCGCACGCGCCCCCCGCCGTCCGCCGCGCACGCCGCGCGCCGCTCGACTGGCTCGCCGCCGCGCAATGGGCGGTCAC
GCTCGCGCTGTGCGCGTTCCTGATCGTACCCGTCGCGATGTCGGTGCTCGCCGGGCTCACGGTCAATTATTTTCGCGGGC
CGTCGAGCGGGCTCACGCTGCGCTGGCTCGGCGAGGTGTGGGCGCAATATCACGGCTCGGTATTCCTGTCGCTCGAAGTC
GCGCTCGCGACGCTCGCCGTCACGCTCGTCGCGGGCGTGCCCGCCGGCTACGCGCTCGCGCGCAGCCGCAGCCGCGTCTC
GCGCCTGATCGAGGAGGCGCTCGTGCTGCCCGTCGCGCTGCCGGGCCTCGCGTCCGCGCTCGCACTGCTGAGCGTCTACG
GCGGCTTCGCCGCGTTCCGCACGAGCCTGTGGTTCATCGTCGTCGGCCACGTCGTGTTCACGCTGCCGTTCATGGTCCGC
GCGGTCGCGGCCGTCGCCGCGCGCGCCGATCTGCGCACGCTCGAGGAAGGCGCGGCGAGCCTCGGCGCATCGTTCGCCAC
GCGCTTCGCGACGATCGTGCTGCCGAACCTGCGCCCGGGCATCATCGCCGGCGCGCTCGCGGTGCTCACGCTGTCGATCG
GCGAATTCAACCTCACGTGGATGCTCCACACGCCCGACACGAAGACGCTGCCTGTCGGCCTCGCCGATACGTACGCGTCA
CTGCGCCTCGAAATCGGCAGCGCGTACACGATCCTGTTCCTGCTGATGACGCTGCCGCTGCTCGTCGCGATGCAACGGCT
CGGCGTCGAGCCGCCGGGCGCGCGCGATCATACACGCGATCGCACGTGCAAGCGCCGCTGA

Upstream 100 bases:

>100_bases
GCGCGCATCGCCGCCATGACCGCAATCGCCACGCACGACGCCGCGCAAGCCGTCTCGCGCTCTTCATTCAAACGTTTAAA
ACTACGGGATCGTTCCGCGC

Downstream 100 bases:

>100_bases
TGAGCCGGCGCCGCCGCGCCGCCTTCGCGATGCCTGTGCGCGCGGCGCTTTCGTTGCGCCCTCGCCGCGCTTTCGTTGCG
CCGCCGTTGTTTTCGGCCTT

Product: ABC transporter, permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: ABC-Type Transporter Permease Component; Spermidine/Putrescine ABC Transporter Permease; ABC Transporter Membrane Component; ABC Transporter Membrane Protein; ABC Polyamine Transporter Inner Membrane Subunit; ABC TRANSPORTER Membrane Component; ABC Transporter Inner Membrane Protein; ABC Transport System Permease Component; Molybdenum ABC Transporter Permease; Permease Protein

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MHSTRRRTTDDRRARDAQAMSRRAAHLACALPVAARGAVISSSSTPPIILVDENVYIALRTPMTPPPKDAAALARPAAAA
GPHAPPAVRRARRAPLDWLAAAQWAVTLALCAFLIVPVAMSVLAGLTVNYFRGPSSGLTLRWLGEVWAQYHGSVFLSLEV
ALATLAVTLVAGVPAGYALARSRSRVSRLIEEALVLPVALPGLASALALLSVYGGFAAFRTSLWFIVVGHVVFTLPFMVR
AVAAVAARADLRTLEEGAASLGASFATRFATIVLPNLRPGIIAGALAVLTLSIGEFNLTWMLHTPDTKTLPVGLADTYAS
LRLEIGSAYTILFLLMTLPLLVAMQRLGVEPPGARDHTRDRTCKRR

Sequences:

>Translated_366_residues
MHSTRRRTTDDRRARDAQAMSRRAAHLACALPVAARGAVISSSSTPPIILVDENVYIALRTPMTPPPKDAAALARPAAAA
GPHAPPAVRRARRAPLDWLAAAQWAVTLALCAFLIVPVAMSVLAGLTVNYFRGPSSGLTLRWLGEVWAQYHGSVFLSLEV
ALATLAVTLVAGVPAGYALARSRSRVSRLIEEALVLPVALPGLASALALLSVYGGFAAFRTSLWFIVVGHVVFTLPFMVR
AVAAVAARADLRTLEEGAASLGASFATRFATIVLPNLRPGIIAGALAVLTLSIGEFNLTWMLHTPDTKTLPVGLADTYAS
LRLEIGSAYTILFLLMTLPLLVAMQRLGVEPPGARDHTRDRTCKRR
>Mature_366_residues
MHSTRRRTTDDRRARDAQAMSRRAAHLACALPVAARGAVISSSSTPPIILVDENVYIALRTPMTPPPKDAAALARPAAAA
GPHAPPAVRRARRAPLDWLAAAQWAVTLALCAFLIVPVAMSVLAGLTVNYFRGPSSGLTLRWLGEVWAQYHGSVFLSLEV
ALATLAVTLVAGVPAGYALARSRSRVSRLIEEALVLPVALPGLASALALLSVYGGFAAFRTSLWFIVVGHVVFTLPFMVR
AVAAVAARADLRTLEEGAASLGASFATRFATIVLPNLRPGIIAGALAVLTLSIGEFNLTWMLHTPDTKTLPVGLADTYAS
LRLEIGSAYTILFLLMTLPLLVAMQRLGVEPPGARDHTRDRTCKRR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. [C]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38959; Mature: 38959

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSTRRRTTDDRRARDAQAMSRRAAHLACALPVAARGAVISSSSTPPIILVDENVYIALR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCEEEEECCEEEEEE
TPMTPPPKDAAALARPAAAAGPHAPPAVRRARRAPLDWLAAAQWAVTLALCAFLIVPVAM
CCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SVLAGLTVNYFRGPSSGLTLRWLGEVWAQYHGSVFLSLEVALATLAVTLVAGVPAGYALA
HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCHHHHH
RSRSRVSRLIEEALVLPVALPGLASALALLSVYGGFAAFRTSLWFIVVGHVVFTLPFMVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAVAARADLRTLEEGAASLGASFATRFATIVLPNLRPGIIAGALAVLTLSIGEFNLTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCEEEEE
MLHTPDTKTLPVGLADTYASLRLEIGSAYTILFLLMTLPLLVAMQRLGVEPPGARDHTRD
EEECCCCCEEECCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RTCKRR
HHCCCC
>Mature Secondary Structure
MHSTRRRTTDDRRARDAQAMSRRAAHLACALPVAARGAVISSSSTPPIILVDENVYIALR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCEEEEECCEEEEEE
TPMTPPPKDAAALARPAAAAGPHAPPAVRRARRAPLDWLAAAQWAVTLALCAFLIVPVAM
CCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SVLAGLTVNYFRGPSSGLTLRWLGEVWAQYHGSVFLSLEVALATLAVTLVAGVPAGYALA
HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCHHHHH
RSRSRVSRLIEEALVLPVALPGLASALALLSVYGGFAAFRTSLWFIVVGHVVFTLPFMVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAVAARADLRTLEEGAASLGASFATRFATIVLPNLRPGIIAGALAVLTLSIGEFNLTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCEEEEE
MLHTPDTKTLPVGLADTYASLRLEIGSAYTILFLLMTLPLLVAMQRLGVEPPGARDHTRD
EEECCCCCEEECCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RTCKRR
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA