| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454216
Identifier: 126454216
GI number: 126454216
Start: 2662711
End: 2663703
Strand: Reverse
Name: 126454216
Synonym: BURPS1106A_2696
Alternate gene names: NA
Gene position: 2663703-2662711 (Counterclockwise)
Preceding gene: 126455341
Following gene: 126451543
Centisome position: 66.79
GC content: 65.86
Gene sequence:
>993_bases ATGCGCAATTTCCTCTCCCTCGGCCGCAGGCTCGCGCTTGCCGCCGCCGTGCTGGCGCCCGTCGCCGCCTTTGCGAACAA CGTGATCGTGCTGAATTCGGCCGAAGCGACGCTTTCCCTGATCGATCAGCAATCCCGGCAGGTCGTCGGCCAGTATCCGA CCGGCAAGGAGCCGCATCACCTGATGGCGACGCCCGACAATGCGTCGCTGATCGTCGCGAATTCGGTGTCGAACAGCCTG ATGTTCCTCGATCCGAAGACGGGCAAGCCGCAGCGCACGCTCGAAGGGATCGACGATCCGTACCAGCTCGGCTTCTCGCC GGATCGCAAGTGGTTCGTCGCGGCCGGCCTGCGGCTCGACCGCGTCGACATCTACAGCTATGACGGCCGCGACCTGAAGC TCGCCAAGCGCTTGCCGCTCGCGGTGATGCCGAGCCACCTCGCGTTCACGAAGGACAGCAAGACGGTGCTCGTGTCGCTG CAGGTGTCGGGCGAGCTCGCGGCGATCGATCTCGCCACGCAGACGCTCAAGTGGAAGATGAAGGTGGGCAAGGTGCCGGC GGGCCTCTGGCTCACGCCCGGCGACAAGTACGTGCTGATCGGGATGACGGGCGCCGATTACGTCGCCGTCGTCGACTGGC GCAACCAGAAGGTCGTGAAGACGATTCCGACCGGCAAGGGCGCGCACAACTTCCGCTCGCTCGCGGACGGCACGCACGTC GCGGTGACGAATCGGGTCGCGAACACGATCAGCATCCTCGACGAGAACGCGCTCACGAACGTCGGCGACATCACGGGCCT GCTGCCCGGCCCGGACGACATGGAACTGTCGGCCGACCGGAAGACGCTGTGGGTGACGTTCCGCTTCGCGAAGAAGGTCG GCGTGATCGATCTGCCGAGCCGCAAGCTGATTCAGACGATTTCGGTCGGCCGCTCGCCGCACGGAATCTACTTCTACGAC CGGGCGCCGTGGACGGCGCCGAACGGCGCGTGA
Upstream 100 bases:
>100_bases CGCCGTTCAAGGTATGCGGGTTCACACTCGGGCGCGAGACGTCAACCGGCGGCGTTCTCGCGCGTTTTACAATCACGCCA GTCCCACGACGTGAGTCTTC
Downstream 100 bases:
>100_bases CGCCGGGGAGCGACTCATGCTGCACGTGATCGCCGCCGCGCTCGACGGCTTCGTGTCCGATCTGCAGACCTGGCTGTACG TCGACATCGTGCAGCCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; Beta-Propeller Repeat-Containing Protein; Beta-Propeller Fold Protein; Cytochrome D1 Heme Region; Triple Helix Repeat-Containing Collagen; Cell Surface Protein; Signal Peptide Protein; WD40 Domain-Containing Protein; YVTN Beta-Propeller Repeat Family Protein; YVTN Family Beta-Propeller Repeat Protein; PGRS-Subfamily Gly-Rich Protein; IPT/TIG Domain Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Vegetative Incompatibility; Signal Peptide; Surface Antigen-Like Protein; Surface Antigen; Cytochrome D1 Heme Subunit; Serine/Threonine Protein Kinase; YVTN Family Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat Family Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Secreted Protein; Lipoprotein; Exported Protein; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MRNFLSLGRRLALAAAVLAPVAAFANNVIVLNSAEATLSLIDQQSRQVVGQYPTGKEPHHLMATPDNASLIVANSVSNSL MFLDPKTGKPQRTLEGIDDPYQLGFSPDRKWFVAAGLRLDRVDIYSYDGRDLKLAKRLPLAVMPSHLAFTKDSKTVLVSL QVSGELAAIDLATQTLKWKMKVGKVPAGLWLTPGDKYVLIGMTGADYVAVVDWRNQKVVKTIPTGKGAHNFRSLADGTHV AVTNRVANTISILDENALTNVGDITGLLPGPDDMELSADRKTLWVTFRFAKKVGVIDLPSRKLIQTISVGRSPHGIYFYD RAPWTAPNGA
Sequences:
>Translated_330_residues MRNFLSLGRRLALAAAVLAPVAAFANNVIVLNSAEATLSLIDQQSRQVVGQYPTGKEPHHLMATPDNASLIVANSVSNSL MFLDPKTGKPQRTLEGIDDPYQLGFSPDRKWFVAAGLRLDRVDIYSYDGRDLKLAKRLPLAVMPSHLAFTKDSKTVLVSL QVSGELAAIDLATQTLKWKMKVGKVPAGLWLTPGDKYVLIGMTGADYVAVVDWRNQKVVKTIPTGKGAHNFRSLADGTHV AVTNRVANTISILDENALTNVGDITGLLPGPDDMELSADRKTLWVTFRFAKKVGVIDLPSRKLIQTISVGRSPHGIYFYD RAPWTAPNGA >Mature_330_residues MRNFLSLGRRLALAAAVLAPVAAFANNVIVLNSAEATLSLIDQQSRQVVGQYPTGKEPHHLMATPDNASLIVANSVSNSL MFLDPKTGKPQRTLEGIDDPYQLGFSPDRKWFVAAGLRLDRVDIYSYDGRDLKLAKRLPLAVMPSHLAFTKDSKTVLVSL QVSGELAAIDLATQTLKWKMKVGKVPAGLWLTPGDKYVLIGMTGADYVAVVDWRNQKVVKTIPTGKGAHNFRSLADGTHV AVTNRVANTISILDENALTNVGDITGLLPGPDDMELSADRKTLWVTFRFAKKVGVIDLPSRKLIQTISVGRSPHGIYFYD RAPWTAPNGA
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35898; Mature: 35898
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNFLSLGRRLALAAAVLAPVAAFANNVIVLNSAEATLSLIDQQSRQVVGQYPTGKEPHH CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCE LMATPDNASLIVANSVSNSLMFLDPKTGKPQRTLEGIDDPYQLGFSPDRKWFVAAGLRLD EEECCCCCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCHHHCCCCCCCCEEEEECCEEE RVDIYSYDGRDLKLAKRLPLAVMPSHLAFTKDSKTVLVSLQVSGELAAIDLATQTLKWKM EEEEEECCCCCEEHHHHCCEEECCCCEEEECCCCEEEEEEEECCCEEEEEEEEEEEEEEE KVGKVPAGLWLTPGDKYVLIGMTGADYVAVVDWRNQKVVKTIPTGKGAHNFRSLADGTHV EECCCCCCCEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHHHCCCCEE AVTNRVANTISILDENALTNVGDITGLLPGPDDMELSADRKTLWVTFRFAKKVGVIDLPS EEEHHHHHHHHHHCCCCCCCCCHHEECCCCCCCCEECCCCEEEEEEEEECCCCCEEECCC RKLIQTISVGRSPHGIYFYDRAPWTAPNGA HHHHHHHHCCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MRNFLSLGRRLALAAAVLAPVAAFANNVIVLNSAEATLSLIDQQSRQVVGQYPTGKEPHH CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCE LMATPDNASLIVANSVSNSLMFLDPKTGKPQRTLEGIDDPYQLGFSPDRKWFVAAGLRLD EEECCCCCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCHHHCCCCCCCCEEEEECCEEE RVDIYSYDGRDLKLAKRLPLAVMPSHLAFTKDSKTVLVSLQVSGELAAIDLATQTLKWKM EEEEEECCCCCEEHHHHCCEEECCCCEEEECCCCEEEEEEEECCCEEEEEEEEEEEEEEE KVGKVPAGLWLTPGDKYVLIGMTGADYVAVVDWRNQKVVKTIPTGKGAHNFRSLADGTHV EECCCCCCCEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHHHCCCCEE AVTNRVANTISILDENALTNVGDITGLLPGPDDMELSADRKTLWVTFRFAKKVGVIDLPS EEEHHHHHHHHHHCCCCCCCCCHHEECCCCCCCCEECCCCEEEEEEEEECCCCCEEECCC RKLIQTISVGRSPHGIYFYDRAPWTAPNGA HHHHHHHHCCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA