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The map label for this gene is dgdR [H]

Identifier: 126454197

GI number: 126454197

Start: 1435490

End: 1436350

Strand: Reverse

Name: dgdR [H]

Synonym: BURPS1106A_1478

Alternate gene names: 126454197

Gene position: 1436350-1435490 (Counterclockwise)

Preceding gene: 126453543

Following gene: 126455161

Centisome position: 36.01

GC content: 72.13

Gene sequence:

>861_bases
GTGGGTTTAGCAATGCGTCCGTTACCGCCTGAACTGCTGCGCAGTTTCGTCGCCGTCGCGCAGACGGGCAGCTTCACCGC
CGCGTCCGAGCGCGTGAGCCTGTCGCAATCGACGGTCAGCCAGCACATCCGCCGCCTCGAGGAACTGCTCGACCGCCCGC
TCTTCGAGCGCGACACCCGCAACGTGCGGCTCGCGCCCAGCGGCGAGGCGCTCTTTCGCTACGCGGTGCGCATTCTCGCG
CTGATGGACGAGGCGGTCGCGTCGGTCTGCGGGCCGCCGCTGTCGGGCAAGGTACGGCTCGGCTTGTCGGAGGATTTCGC
GCTCACGCACCTGACGGCCGCGCTCGCGAGCTTCGTGCAGCGCAACCCGGAAGTCGAGCTCGAGATCGCGACCGGCTTGT
CCGGCGATCTGTTCGACGCGCTCGACGCCGGGCGGCACGATCTCGTCTTCGCCAAGCGGATCGCGGGCAGCCGGCGCGGC
CGCGTGATCCGCACCGAGCCGCTCTACTGGTGCGCGGGCCCCGCTTCGCCGCTCACCGGGCGCGAGCCCGTGCTGCCGCT
CGCGCTGCATCCGCAGCCGAGCGTGTCGCGCCAGCGCGTGCTCGAGACGCTCGATGCGATCGGCCGGCCGTACCGGATCG
CGGTGGCGAGCACGAGCATCGCGGTGCTGCGCGCGGCGGCGAGCGCGGGCCTCGGCATCAGCGCGTTCGCGGGCTACGTG
ATCCCGCACGGGCTCGCGAAGCTCGAGGCCGGTCTGCCGCCGCTCGGCGAGCTCGAATACGTGATCGACCGGCCCGCGAA
CGCGTCGCGCCCGGCGCTCGCGCTCGAGGCAACGCTTGTCGCGGCCGCGCACGAATTCTGA

Upstream 100 bases:

>100_bases
CTGCGCCGTCGCGCGCCTCCCGCGTCGCGCGACGGCGCAGGCCACGCACATCGTAGTCCCGCCGCCCGCGGCCATTTATG
AAGTTGTCGAATTCGATTCA

Downstream 100 bases:

>100_bases
CGAAGGCCCGCGTAAAGGCGGCGAAGGCGCGCGGCGCGCCGCTTGCCCGGCCTCGGGCGAGGCTGACCCAATCGCCACGA
TGCGGTCATCGTCCGCTCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAPSGEALFRYAVRILA
LMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFVQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRG
RVIRTEPLYWCAGPASPLTGREPVLPLALHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
IPHGLAKLEAGLPPLGELEYVIDRPANASRPALALEATLVAAAHEF

Sequences:

>Translated_286_residues
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAPSGEALFRYAVRILA
LMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFVQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRG
RVIRTEPLYWCAGPASPLTGREPVLPLALHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
IPHGLAKLEAGLPPLGELEYVIDRPANASRPALALEATLVAAAHEF
>Mature_285_residues
GLAMRPLPPELLRSFVAVAQTGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAPSGEALFRYAVRILAL
MDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFVQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGR
VIRTEPLYWCAGPASPLTGREPVLPLALHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYVI
PHGLAKLEAGLPPLGELEYVIDRPANASRPALALEATLVAAAHEF

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=34.251968503937, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787806, Length=138, Percent_Identity=36.9565217391304, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=30.2816901408451, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=28.7769784172662, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787589, Length=168, Percent_Identity=32.7380952380952, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081904, Length=247, Percent_Identity=26.7206477732794, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=29.2517006802721, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30564; Mature: 30432

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTR
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
NVRLAPSGEALFRYAVRILALMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFVQ
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
RNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGRVIRTEPLYWCAGPASPLTG
CCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCC
REPVLPLALHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHH
IPHGLAKLEAGLPPLGELEYVIDRPANASRPALALEATLVAAAHEF
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLAMRPLPPELLRSFVAVAQTGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTR
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
NVRLAPSGEALFRYAVRILALMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFVQ
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
RNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGRVIRTEPLYWCAGPASPLTG
CCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCC
REPVLPLALHPQPSVSRQRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHH
IPHGLAKLEAGLPPLGELEYVIDRPANASRPALALEATLVAAAHEF
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]