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The map label for this gene is rhaS [H]

Identifier: 126454175

GI number: 126454175

Start: 3171032

End: 3172012

Strand: Reverse

Name: rhaS [H]

Synonym: BURPS1106A_3262

Alternate gene names: 126454175

Gene position: 3172012-3171032 (Counterclockwise)

Preceding gene: 126453304

Following gene: 126452803

Centisome position: 79.53

GC content: 67.28

Gene sequence:

>981_bases
GTGTGCTACCGAAAAGGGATCGCTGTTGTCTTGTTTGGAGGCTTTTCGTTGATGCAGGCCGGGCGCATGGCGGAGATCTT
CAATCTCGCCAATCGCTTTCGACACGCGGGCGAGGATTCCGGCGGCTACGAAATGCTGCTGTTGTCGGCGACGGGCGGCG
CGGTGTATTCGTCGTCCGGCATTCCCGTCTGGACCCAGCCGCTGCACGAGCGTGCGATCGAGCGCGTGCATGCGATCTTC
GCGATCGGCGAACCGGACGCGGCCGATCGCGACGACGAGAAGGTGTCCGAATGGTTGCGCAGCGCCCGCGCGCATGTTCG
CGCATCGGGTGGCGCGCGGCGCCTGATGGGGCTTGCCGCGCTCGAACGCGGCGATGCGGCGGCGGACGACCTGTCGATCG
ACGCGATGCTCTCGGGCGCCGCATCCGCCGAGAAAGTGCGCCCGACAGCGGCGGAGCGCGCGGCGTTCTCGGCCGCGCTC
GCGATCATTCGGCACGATTGCGGCGATAGTGCCGCGCACGAGGTTGCCGAGCGCTTGTGCCCGGCGCTGAGCGCACGGCC
CGCCGAATCGGCTTTCGCCGCGCGCGAGGCGCGGGCGAGCAAGCTGATTCGCGCGTCGGTTCAGCAACTGCGCGACAACA
GCGCCAACCGCATTTCGATCGCCGATACCGCGCATGCGGCGGCGATGAGCGAGCGCAATTTCCTGCGCCGCTTCAAGCAG
GAAATCGGCGTGACGCCGTCCGAATTCGTGCAGAAAGTCCGGCTCGAGCATGCGTGCCACATGCTCGTGCATACCGATCT
GCCGGTCGACAAGATCGCGCGGCGCACCGGCCTCGGCAGCGGCGACCGCCTCGCGAAGCTGTTCCGCCAGCATCTGTCGA
TGTCGCCGACCGAGTATCGCGCGATCGAGCGCAGCCGAGGCGCGGACGCGGATCTCGCGTGCGGCGATTTCGTTTCGCGG
CTGAGCGGATCGGTTTCATAA

Upstream 100 bases:

>100_bases
TAGACATTGCTGAATGAGTGAAAGGGCCGGCGGCATGGAATGCGCGTTCAACATTGGTCGGATGGGAGCACACGTGAGTC
GTGGTGCAGCTTTCGGAGGC

Downstream 100 bases:

>100_bases
CAGGCGGCGCGCCGCGTTCGTCGCTTCACTCCCCCACGTCCGTTTCGCCACGCTCGCGTGCGAAGCCGCGGGCGGCGTTC
GATCGTCGTTTCGGGAAGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIF
AIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSAAL
AIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRISIADTAHAAAMSERNFLRRFKQ
EIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSR
LSGSVS

Sequences:

>Translated_326_residues
MCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIF
AIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSAAL
AIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRISIADTAHAAAMSERNFLRRFKQ
EIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSR
LSGSVS
>Mature_326_residues
MCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIF
AIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSAAL
AIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRISIADTAHAAAMSERNFLRRFKQ
EIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSR
LSGSVS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35139; Mature: 35139

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSSSG
CCCCCCCEEEEECCHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCC
IPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLC
HHCCCCCCCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PALSARPAESAFAAREARASKLIRASVQQLRDNSANRISIADTAHAAAMSERNFLRRFKQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
EIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTEYR
HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
AIERSRGADADLACGDFVSRLSGSVS
HHHHHCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSSSG
CCCCCCCEEEEECCHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCC
IPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLC
HHCCCCCCCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PALSARPAESAFAAREARASKLIRASVQQLRDNSANRISIADTAHAAAMSERNFLRRFKQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
EIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTEYR
HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
AIERSRGADADLACGDFVSRLSGSVS
HHHHHCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA