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The map label for this gene is sodB [H]

Identifier: 126454128

GI number: 126454128

Start: 916240

End: 916818

Strand: Direct

Name: sodB [H]

Synonym: BURPS1106A_0933

Alternate gene names: 126454128

Gene position: 916240-916818 (Clockwise)

Preceding gene: 126455268

Following gene: 126453553

Centisome position: 22.97

GC content: 62.18

Gene sequence:

>579_bases
ATGGCTCATACGCTCCCGCCGCTGCCGTACGCTGAAGACGCCCTCGCTCCGCATATCTCGCAGGAGACGATCCAGTTTCA
CTACGGCAAGCATCACCAGGCTTATGTGACGAACCTGAACAACCTGATCCCCGGCACCGAGTTCGAGAACCTGCCGCTGG
AAGAGATCGTGAAGAAGTCGTCGGGCGGCATCTTCAACAACGCCGCGCAGATCTGGAATCACACGTTCTTCTGGAACAGC
CTGTCGCCGAACGGCGGCGGCGCGCCGACGGGCGCGCTCGGCGACGCGATCAACGCGAAGTGGGGTTCGTTCGACGCGTT
CAAGGAGGCGTTCACGAAGGCAGCGGTCGGCACGTTCGGCTCGGGCTGGGCTTGGCTCGTGAAGAAGGCGGACGGCTCGC
TCGACATCGTGTCGACGAGCAATGCGGCCACGCCGCTCACGACGGCCGACAAGCCGCTCGTCACGATCGACGTGTGGGAA
CACGCTTACTACATCGATTACCGCAACGCGCGCCCGAAGTTCGTCGAAGCGTTCTGGAACATCGTGAACTGGGACTTCGC
CGCGAAGAACTTCGCGTAA

Upstream 100 bases:

>100_bases
AAGGCCCGCGAGTTTGCGGGGTTATTCGGACTCGCCTACAATCGGGCGTTCCGCGGCATCCAACACTGCCCTCCCTACAT
ACACTTCGAAGGAACCGATC

Downstream 100 bases:

>100_bases
CGCGCGCCCTTCATCCGACGATTACGGTCCGACAAGCATCGAGCGACACACAGTGACGAGATCTCGAATCAGTCTCCACG
CGAAAGCCCTCCACTGGAGG

Product: superoxide dismutase (Fe)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAHTLPPLPYAEDALAPHISQETIQFHYGKHHQAYVTNLNNLIPGTEFENLPLEEIVKKSSGGIFNNAAQIWNHTFFWNS
LSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKPLVTIDVWE
HAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Sequences:

>Translated_192_residues
MAHTLPPLPYAEDALAPHISQETIQFHYGKHHQAYVTNLNNLIPGTEFENLPLEEIVKKSSGGIFNNAAQIWNHTFFWNS
LSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKPLVTIDVWE
HAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA
>Mature_191_residues
AHTLPPLPYAEDALAPHISQETIQFHYGKHHQAYVTNLNNLIPGTEFENLPLEEIVKKSSGGIFNNAAQIWNHTFFWNSL
SPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKPLVTIDVWEH
AYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=45.5, Blast_Score=168, Evalue=3e-42,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=45.5, Blast_Score=168, Evalue=3e-42,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=38.5416666666667, Blast_Score=127, Evalue=5e-30,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=68.75, Blast_Score=284, Evalue=2e-78,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=45.6310679611651, Blast_Score=173, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=39, Blast_Score=137, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=193, Percent_Identity=39.3782383419689, Blast_Score=132, Evalue=9e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=37.0192307692308, Blast_Score=130, Evalue=1e-31,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=42.2680412371134, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21144; Mature: 21012

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPPLPYAEDALAPHISQETIQFHYGKHHQAYVTNLNNLIPGTEFENLPLEEIVKKS
CCCCCCCCCCCCHHHCCCCCCHHEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFG
CCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDIVSTSNAATPLTTADKPLVTIDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
IVNWDFAAKNFA
HHCCCCCCCCCC
>Mature Secondary Structure 
AHTLPPLPYAEDALAPHISQETIQFHYGKHHQAYVTNLNNLIPGTEFENLPLEEIVKKS
CCCCCCCCCCCHHHCCCCCCHHEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFG
CCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDIVSTSNAATPLTTADKPLVTIDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
IVNWDFAAKNFA
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]