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The map label for this gene is yhcM [H]

Identifier: 126454108

GI number: 126454108

Start: 1739359

End: 1740459

Strand: Direct

Name: yhcM [H]

Synonym: BURPS1106A_1775

Alternate gene names: 126454108

Gene position: 1739359-1740459 (Clockwise)

Preceding gene: 126455059

Following gene: 126455170

Centisome position: 43.61

GC content: 65.21

Gene sequence:

>1101_bases
ATGATGAACGTCACCGAATACTACGAGCACGAGCTGAACACGCGCGGCTATCAGTCCGATGCCGCGCAGCGCGCCGCGGT
CGAACGCCTGCAGCGCTGCTACGGCGAATGGGTTGCCTACAAGGCGCGTCGCTCGAATGCGTTCAAGAAACTCGTCGTCC
GCCCCGATCTGCCGCGCGGCGTCTACATGTGGGGCGGCGTCGGGCGCGGCAAGAGCTTCCTGATGGACAGCTTCTACGCG
GTCGTGCCGGTGCAGCGCAAGACGCGGCTGCACTTCCACGAGTTCATGCGCGAAGTGCACCGCGAACTCGAGGAGCTGAA
AGGGCAGGCCGATCCGCTCGACGAGCTCGCGCGCCGGATCGCGAAGCGCTACCGGCTCATCTGCTTCGACGAATTCCACG
TATCGGACATCGCCGACGCGATGATCCTGTATCGGCTGCTCGACCGGCTGTTCTCGAACGGCGTGCAGTTCGTGATGACG
TCCAACTACGATCCGGACGATCTGTATCCGGACGGCCTGCATCGCGACCGGATGCTGCCCGCGATCGCGCTTCTGAAGGA
GCGGCTCGACGTGCTGAACGTCGACGCGGGCGTCGACTACCGGCAACGCACGCTCGCGCAGGTGCGGATGTATCACACGC
CGCTCGGCGCGGATGCCGACCGAGAACTGCGGCACGCGTTCGCGCAGCTCGCCGCGGTGCCGGACGAGAGCCCGATCCTG
CATATCGAGAAGCGCGAGATCAAGGCGCTGCGCCGCGCGGACGGCGTCGTCTGGTTCGATTTCGCGACGCTCTGCGGCGG
CCCCCGTTCGCAGAACGACTATCTCGAGCTCGCGAGCCGCTTCCATGCGATCGTGCTGTCGGACGTGCCGCAGATGTCGC
CGCGAATGGCGTCCGAAGCGCGCCGCTTCACGTGGCTCATCGATGTGCTGTACGACCACAAGGTGAAGCTGCTGATGTCG
GCCGCCGTGCCGGCGGACGATCTGTACGTCGAGGGGCCGATGGCGAACGAATTCAGCCGTACCGTCTCGCGGATCGTCGA
GATGCAGTCGAAGGAATATATCGAGGCGCCGCGCCGCCTGATCGATACGTCGCTGACCTGA

Upstream 100 bases:

>100_bases
CGACAACGCAACACCGCGCGCCGGCCCTCGCGGCCGGCGTCGCAGTTTCTCGGCGAAGGCGGGCGGGGTTTCCCGCTCGC
CTTCGTTTTTGCCGGTTTGC

Downstream 100 bases:

>100_bases
TCCGGTGTGCCGGACAGCGGCGCGCAACGCGCGCCGCGCGGCGCGAACAACCCGACCCGAATTCGAAAACGCGCGCAGAC
GGTTAACTTCGGTTAATTCG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MMNVTEYYEHELNTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYA
VVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMT
SNYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAQLAAVPDESPIL
HIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMS
AAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT

Sequences:

>Translated_366_residues
MMNVTEYYEHELNTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYA
VVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMT
SNYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAQLAAVPDESPIL
HIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMS
AAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT
>Mature_366_residues
MMNVTEYYEHELNTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYA
VVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMT
SNYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAQLAAVPDESPIL
HIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMS
AAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=396, Percent_Identity=34.5959595959596, Blast_Score=239, Evalue=3e-63,
Organism=Escherichia coli, GI1789627, Length=363, Percent_Identity=44.3526170798898, Blast_Score=290, Evalue=8e-80,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=32.5301204819277, Blast_Score=212, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=36.2776025236593, Blast_Score=179, Evalue=4e-46,
Organism=Drosophila melanogaster, GI20129913, Length=349, Percent_Identity=34.6704871060172, Blast_Score=191, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42437; Mature: 42437

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNVTEYYEHELNTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRI
EEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTSNYDPDDLYPDGLHRDRMLP
HHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH
AIALLKERLDVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAQLAAVPDESPIL
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
HIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEA
EEHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RRFTWLIDVLYDHKVKLLMSAAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IDTSLT
HHCCCC
>Mature Secondary Structure
MMNVTEYYEHELNTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRI
EEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTSNYDPDDLYPDGLHRDRMLP
HHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH
AIALLKERLDVLNVDAGVDYRQRTLAQVRMYHTPLGADADRELRHAFAQLAAVPDESPIL
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
HIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEA
EEHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RRFTWLIDVLYDHKVKLLMSAAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IDTSLT
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]