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The map label for this gene is flgD [H]

Identifier: 126454100

GI number: 126454100

Start: 262254

End: 263096

Strand: Direct

Name: flgD [H]

Synonym: BURPS1106A_0280

Alternate gene names: 126454100

Gene position: 262254-263096 (Clockwise)

Preceding gene: 126454889

Following gene: 126453793

Centisome position: 6.58

GC content: 66.67

Gene sequence:

>843_bases
ATGACATCCTCCTTCACCACCATCGGCGGCAGCGGCACGACCGTCAACAGCCTGCCGTACGACACGATGAGCTCGAACGG
GCAGTCGTCGGGCACGTCGGGCGCGAACACGACGAACGGCACTGCCGGCACGAACGGCACGAGCGGCGCGAACTCGGGCA
TCAACGTCGCGAGCTCGCTGTCGACGACGTCCGCTGCCGATCTGCAGACGACGTTCCTCAAGCTGCTCGTCACGCAGTTG
CAGAACCAGGATCCGACGAGCCCCGTCGACAGCTCGCAGATGACCTCGCAGCTCGCGCAGATCAACACCGTGAGCGGCAT
CGCGCAGTTGAACACCGCGCTCACGTCGCTGTCGTCGCAGCTCACCGCGGGCCAGCAGACGCAGGCGGCGATGCTGATCG
GCTCTAACGTGCTCGCGCCGGGCAACACCGTGCCCGTCAAGAGCGGCGCGGCTTCGCCGTTCGGCGTGCAGCTCACGAGC
GCCGTGTCGAACCTCACGATCACCGTGAAGAACGCGTCGGGCGTCGTCGTCAACACGATCAACGCGGGCGCGCAATCGGC
GGGCACCGTGCCGTTCAACTGGACGCCGACCGATACGGCGGGCAACAAGCTGCCCGACGGCACCTACACGATCAGCGCGA
GCTACACCGACACGTCCGGCAAGCAGTACGCGCCGACCACGCTGTCCTCCGCGCAGGTGCTGAGCGTCATCAAGCAGGCG
GACGGCACGCCGGGGCTCGTGCTGTCGAACGGCTCGACGGTCGGCTTCAGCCAGGTCGCGTCGATCTTCCCGAACACCAC
GAAGAGCGCGTCGACGAGCAGCTCCTCGTCTTCCACCAACTAA

Upstream 100 bases:

>100_bases
ATACCGCGAAGCAGCTGATGCTCAAGACGCTGACGATCGGCAGCTGACGCCCCCCTTTTTCATCGATCGAAACACGCATA
GCAGAGGAAGGCGAACCCGG

Downstream 100 bases:

>100_bases
TCCAGCTTCTTCGCTACGGAGACCGAGATGGGCTATCAACAGGGTTTGAGCGGTTTGGCAGGCGCGTCGAGCGACCTCGA
CGTGATCGGCAACAACATCG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTSSFTTIGGSGTTVNSLPYDTMSSNGQSSGTSGANTTNGTAGTNGTSGANSGINVASSLSTTSAADLQTTFLKLLVTQL
QNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTVPVKSGAASPFGVQLTS
AVSNLTITVKNASGVVVNTINAGAQSAGTVPFNWTPTDTAGNKLPDGTYTISASYTDTSGKQYAPTTLSSAQVLSVIKQA
DGTPGLVLSNGSTVGFSQVASIFPNTTKSASTSSSSSSTN

Sequences:

>Translated_280_residues
MTSSFTTIGGSGTTVNSLPYDTMSSNGQSSGTSGANTTNGTAGTNGTSGANSGINVASSLSTTSAADLQTTFLKLLVTQL
QNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTVPVKSGAASPFGVQLTS
AVSNLTITVKNASGVVVNTINAGAQSAGTVPFNWTPTDTAGNKLPDGTYTISASYTDTSGKQYAPTTLSSAQVLSVIKQA
DGTPGLVLSNGSTVGFSQVASIFPNTTKSASTSSSSSSTN
>Mature_279_residues
TSSFTTIGGSGTTVNSLPYDTMSSNGQSSGTSGANTTNGTAGTNGTSGANSGINVASSLSTTSAADLQTTFLKLLVTQLQ
NQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTVPVKSGAASPFGVQLTSA
VSNLTITVKNASGVVVNTINAGAQSAGTVPFNWTPTDTAGNKLPDGTYTISASYTDTSGKQYAPTTLSSAQVLSVIKQAD
GTPGLVLSNGSTVGFSQVASIFPNTTKSASTSSSSSSTN

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=181, Percent_Identity=44.7513812154696, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 27758; Mature: 27627

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSFTTIGGSGTTVNSLPYDTMSSNGQSSGTSGANTTNGTAGTNGTSGANSGINVASSL
CCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
STTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQ
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTAGQQTQAAMLIGSNVLAPGNTVPVKSGAASPFGVQLTSAVSNLTITVKNASGVVVNTI
HCCCCCHHEEEEECCCEECCCCCEECCCCCCCCCCEEHHHCCCEEEEEEECCCCEEEEEE
NAGAQSAGTVPFNWTPTDTAGNKLPDGTYTISASYTDTSGKQYAPTTLSSAQVLSVIKQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCHHHHHHHHHHC
DGTPGLVLSNGSTVGFSQVASIFPNTTKSASTSSSSSSTN
CCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSSFTTIGGSGTTVNSLPYDTMSSNGQSSGTSGANTTNGTAGTNGTSGANSGINVASSL
CCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
STTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQ
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTAGQQTQAAMLIGSNVLAPGNTVPVKSGAASPFGVQLTSAVSNLTITVKNASGVVVNTI
HCCCCCHHEEEEECCCEECCCCCEECCCCCCCCCCEEHHHCCCEEEEEEECCCCEEEEEE
NAGAQSAGTVPFNWTPTDTAGNKLPDGTYTISASYTDTSGKQYAPTTLSSAQVLSVIKQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCHHHHHHHHHHC
DGTPGLVLSNGSTVGFSQVASIFPNTTKSASTSSSSSSTN
CCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]