| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is gltJ [H]
Identifier: 126454005
GI number: 126454005
Start: 3340639
End: 3341379
Strand: Reverse
Name: gltJ [H]
Synonym: BURPS1106A_3430
Alternate gene names: 126454005
Gene position: 3341379-3340639 (Counterclockwise)
Preceding gene: 126452231
Following gene: 126452941
Centisome position: 83.78
GC content: 62.89
Gene sequence:
>741_bases ATGTCTTACCACTGGAACTGGGGCATCTTCCTGAGCCCCGTTTCGACGGGCGAACCGACCACCTATCTCGGCTGGCTGAT GTCGGGATTCTGGGTGACGGTCAAGGTGTCGCTCGTCGCGTGGGTGATCGCGCTCGTCGTCGGGTCGCTGTTCGGCGTGC TGCGCACCGTGCCGAACAAATGGCTGTCGGCGATCGGTACGGTCTACGTATCGATCTTTCGCAACATTCCGCTCATCGTG CAGTTCTTCGTCTGGTACCTCGTCGTGCCCGAATTGCTGCCCGTGTCGATCGGCACCTGGATCAAGCAGTTGCCGCCCGG CACGCAATTCTTCACCGCGTCGATCGTCTGTCTCGGCCTCTTCACGGGCGCGCGCGTCTGCGAGCAGGTGCGCTCCGGCA TCAACGCGCTGCCCAAGGGCCAGCGCGCGGCCGGCCTCGCGATGGGCTTCACGCAATGGCAGACGTACCGCTACGTGCTG CTGCCCGTCGCGTACCGGATCATCGTGCCGCCGCTCACGTCCGAATTCCTGAACATTTTCAAGAACTCGGCCGTCGCCTC GACGATCGGTCTGCTCGATCTGTCCGCGCAGGCGCGGCAGCTCGTCGACTACACCGCGCAAACGTATGAGTCGTTCATCG CGGTCACGCTCGCGTACGTGGTGATCAACCTGATCGTGATGACGTTCATGCGCTGGGTCGAGAGCAAATCCCGGCTGCCC GGCTACATCGGAGGCAAGTGA
Upstream 100 bases:
>100_bases GACAAGGCGCTCGACTGAGCGGACGGCCGTTCGAGCTAACAAGCGCTGACGAAACGGAAGAGGCACGGCTTCTTCCGTTT CTTTTTGTTGGAGTCTGGCT
Downstream 100 bases:
>100_bases TGCATCAGTTCGACTGGAGTAGTATCCCCGGCGCGCTGCCGACGCTCTGGACGGGCGCGGTCGTCACGTTCAAGATCACG CTGCTCGCGATCGTGATCGG
Product: glutamate/aspartate ABC transporter, permease protein GltJ
Products: ADP; phosphate; L-glutamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSYHWNWGIFLSPVSTGEPTTYLGWLMSGFWVTVKVSLVAWVIALVVGSLFGVLRTVPNKWLSAIGTVYVSIFRNIPLIV QFFVWYLVVPELLPVSIGTWIKQLPPGTQFFTASIVCLGLFTGARVCEQVRSGINALPKGQRAAGLAMGFTQWQTYRYVL LPVAYRIIVPPLTSEFLNIFKNSAVASTIGLLDLSAQARQLVDYTAQTYESFIAVTLAYVVINLIVMTFMRWVESKSRLP GYIGGK
Sequences:
>Translated_246_residues MSYHWNWGIFLSPVSTGEPTTYLGWLMSGFWVTVKVSLVAWVIALVVGSLFGVLRTVPNKWLSAIGTVYVSIFRNIPLIV QFFVWYLVVPELLPVSIGTWIKQLPPGTQFFTASIVCLGLFTGARVCEQVRSGINALPKGQRAAGLAMGFTQWQTYRYVL LPVAYRIIVPPLTSEFLNIFKNSAVASTIGLLDLSAQARQLVDYTAQTYESFIAVTLAYVVINLIVMTFMRWVESKSRLP GYIGGK >Mature_245_residues SYHWNWGIFLSPVSTGEPTTYLGWLMSGFWVTVKVSLVAWVIALVVGSLFGVLRTVPNKWLSAIGTVYVSIFRNIPLIVQ FFVWYLVVPELLPVSIGTWIKQLPPGTQFFTASIVCLGLFTGARVCEQVRSGINALPKGQRAAGLAMGFTQWQTYRYVLL PVAYRIIVPPLTSEFLNIFKNSAVASTIGLLDLSAQARQLVDYTAQTYESFIAVTLAYVVINLIVMTFMRWVESKSRLPG YIGGK
Specific function: Part of the binding-protein-dependent transport system for aspartate/glutamate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786874, Length=247, Percent_Identity=63.5627530364373, Blast_Score=326, Evalue=1e-90, Organism=Escherichia coli, GI1788226, Length=217, Percent_Identity=29.0322580645161, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=28.5046728971963, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=27.3972602739726, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI48994930, Length=122, Percent_Identity=39.344262295082, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788645, Length=224, Percent_Identity=27.6785714285714, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87082239, Length=231, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788646, Length=190, Percent_Identity=27.3684210526316, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=24.3243243243243, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=23.2142857142857, Blast_Score=68, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 27401; Mature: 27269
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYHWNWGIFLSPVSTGEPTTYLGWLMSGFWVTVKVSLVAWVIALVVGSLFGVLRTVPNK CCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLSAIGTVYVSIFRNIPLIVQFFVWYLVVPELLPVSIGTWIKQLPPGTQFFTASIVCLGL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FTGARVCEQVRSGINALPKGQRAAGLAMGFTQWQTYRYVLLPVAYRIIVPPLTSEFLNIF HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH KNSAVASTIGLLDLSAQARQLVDYTAQTYESFIAVTLAYVVINLIVMTFMRWVESKSRLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GYIGGK CCCCCC >Mature Secondary Structure SYHWNWGIFLSPVSTGEPTTYLGWLMSGFWVTVKVSLVAWVIALVVGSLFGVLRTVPNK CEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLSAIGTVYVSIFRNIPLIVQFFVWYLVVPELLPVSIGTWIKQLPPGTQFFTASIVCLGL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FTGARVCEQVRSGINALPKGQRAAGLAMGFTQWQTYRYVLLPVAYRIIVPPLTSEFLNIF HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH KNSAVASTIGLLDLSAQARQLVDYTAQTYESFIAVTLAYVVINLIVMTFMRWVESKSRLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GYIGGK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamate [Periplasm] + H2O = ADP + phosphate + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]