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The map label for this gene is ycjN [C]

Identifier: 126453944

GI number: 126453944

Start: 858904

End: 860232

Strand: Direct

Name: ycjN [C]

Synonym: BURPS1106A_0876

Alternate gene names: 126453944

Gene position: 858904-860232 (Clockwise)

Preceding gene: 126451824

Following gene: 126455091

Centisome position: 21.53

GC content: 66.74

Gene sequence:

>1329_bases
ATGCAACGAAAGACGCTTACCGCCGCCGCCGCACGCGTTGCCGCGTTCGCCGCGCTCGCCTCGTCGGCGCTCGCCGCGCA
GGCGGCGACGCTGACGATCGCGACGCTCAACAACCCGGACATGATCGAGCTGAAGAAGCTGTCGTCCGCGTTCGAGAAGG
CGAACCCGGACATCCGGCTCAACTGGGTGATCCTCGAGGAGAACGTGCTGCGCCAGCGCGCGACGACCGACATCACGACG
GGCAGCGGCCAGTTCGACGTGATGGCGATCGGCACGTACGAGGCGCCGCAGTGGGGCAAGCGCGGCTGGCTCGCGCCGAT
GTCGAACCTGCCCGCCGATTACGATCTGAACGACGTGATCAAGACGGCGCGCGATTCGCTGTCGTACAACGGCCAGTTGT
ACGCGCTGCCGTTCTACGTCGAAAGCTCGATGACGTTCTACCGCAAGGACCTGTTCGCCGCGAAGGGCCTGAAGATGCCC
GAGCAGCCGACTTACGAGCAGATCGCCGAATTCGCCGACAAACTGACCGACCGTGCGAACGGCACCTACGGGATCTGCCT
GCGCGGCAAGGCGGGCTGGGGCGAGAACATGGCGTACGTGTCGACGGTCGTCAACACGTTCGGCGGCCGCTGGTTCGACG
AGAACTGGAACGCGCAGCTCACGTCGCCCGAGTGGAAGAAGGCGATCAACTTCTACGTGAACCTGCTCAAGAAGAACGGG
CCGCCGGGCGCGAGCTCGAACGGCTTCAACGAGAACCTGACGCTCACCGCATCGGGCAAGTGCGCGATGTGGATCGACGC
GACGGTCGCGGCGGGCATGCTGTACAACAAGCAGCAGTCGCAGGTCGCGGAGAAGATCGGTTTCGCGGCCGCGCCGGTGG
CCGCGACGCCGAAGGGCTCGCACTGGCTGTGGGCGTGGGCGCTCGCGATTCCGAAGACGTCGAAGCAGCAGGATGCGGCG
AAGAAGTTCGTCACGTGGGCGACGTCGAAACAGTACGTCGAGATGGTCGGCAAGGACGAGGGCTGGGCGTCGGTGCCGCC
GGGCACGCGCCAGTCCACTTATCAGCGCGCCGAGTACAAGGCCGCCGCGCCGTTCTCCGAGTTCGTGCTGAAGGCGATCC
AGACCGCCGATCCGACCGATCCGTCGCTGAAGAAGGTGCCGTACACGGGCGTGCAATACGTCGGGATTCCTGAGTTCCAG
TCGTTCGGCACGGTGGTCGGCCAGGCGATCGCGGGCGCGGTTGCCGGGCAGACGAGCGTCGACCAGGCGCTCGCCGCGGG
CCAGGCGGCGGCCGAGCGCGCGGTGCGCCAGGCCGGCTACCGCAAGTGA

Upstream 100 bases:

>100_bases
AGGTGATCTCGCGCTACGCGCGCGCGTGCGCCATGCAGCACAACGCTTGAAGCAGTCCGCCCGCCGGGCGGCGACACGAT
ATCAAGACAGGAGACATGCC

Downstream 100 bases:

>100_bases
AGCGCCGTGCGCGCCGCGCCCGCATCGGGCGCGGCGCGCACGGCATCGCAGCAGCGCGGGCGCGAAGCGGTGCGCGCGCC
CGCGCATCGAAAGAGGTGGT

Product: putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MQRKTLTAAAARVAAFAALASSALAAQAATLTIATLNNPDMIELKKLSSAFEKANPDIRLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGKRGWLAPMSNLPADYDLNDVIKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMP
EQPTYEQIAEFADKLTDRANGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATPKGSHWLWAWALAIPKTSKQQDAA
KKFVTWATSKQYVEMVGKDEGWASVPPGTRQSTYQRAEYKAAAPFSEFVLKAIQTADPTDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQAIAGAVAGQTSVDQALAAGQAAAERAVRQAGYRK

Sequences:

>Translated_442_residues
MQRKTLTAAAARVAAFAALASSALAAQAATLTIATLNNPDMIELKKLSSAFEKANPDIRLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGKRGWLAPMSNLPADYDLNDVIKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMP
EQPTYEQIAEFADKLTDRANGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATPKGSHWLWAWALAIPKTSKQQDAA
KKFVTWATSKQYVEMVGKDEGWASVPPGTRQSTYQRAEYKAAAPFSEFVLKAIQTADPTDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQAIAGAVAGQTSVDQALAAGQAAAERAVRQAGYRK
>Mature_442_residues
MQRKTLTAAAARVAAFAALASSALAAQAATLTIATLNNPDMIELKKLSSAFEKANPDIRLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGKRGWLAPMSNLPADYDLNDVIKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMP
EQPTYEQIAEFADKLTDRANGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATPKGSHWLWAWALAIPKTSKQQDAA
KKFVTWATSKQYVEMVGKDEGWASVPPGTRQSTYQRAEYKAAAPFSEFVLKAIQTADPTDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQAIAGAVAGQTSVDQALAAGQAAAERAVRQAGYRK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48003; Mature: 48003

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKTLTAAAARVAAFAALASSALAAQAATLTIATLNNPDMIELKKLSSAFEKANPDIRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
NWVILEENVLRQRATTDITTGSGQFDVMAIGTYEAPQWGKRGWLAPMSNLPADYDLNDVI
EEEEECHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHH
KTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPEQPTYEQIAEFADKLTDRAN
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
GTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNG
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCC
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATPKGS
CCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCC
HWLWAWALAIPKTSKQQDAAKKFVTWATSKQYVEMVGKDEGWASVPPGTRQSTYQRAEYK
CEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AAAPFSEFVLKAIQTADPTDPSLKKVPYTGVQYVGIPEFQSFGTVVGQAIAGAVAGQTSV
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHH
DQALAAGQAAAERAVRQAGYRK
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQRKTLTAAAARVAAFAALASSALAAQAATLTIATLNNPDMIELKKLSSAFEKANPDIRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
NWVILEENVLRQRATTDITTGSGQFDVMAIGTYEAPQWGKRGWLAPMSNLPADYDLNDVI
EEEEECHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHH
KTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPEQPTYEQIAEFADKLTDRAN
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
GTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNG
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCC
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATPKGS
CCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCC
HWLWAWALAIPKTSKQQDAAKKFVTWATSKQYVEMVGKDEGWASVPPGTRQSTYQRAEYK
CEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AAAPFSEFVLKAIQTADPTDPSLKKVPYTGVQYVGIPEFQSFGTVVGQAIAGAVAGQTSV
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHH
DQALAAGQAAAERAVRQAGYRK
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]