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The map label for this gene is alsB [H]

Identifier: 126453843

GI number: 126453843

Start: 1819395

End: 1820525

Strand: Direct

Name: alsB [H]

Synonym: BURPS1106A_1866

Alternate gene names: 126453843

Gene position: 1819395-1820525 (Clockwise)

Preceding gene: 126452001

Following gene: 126455157

Centisome position: 45.62

GC content: 65.52

Gene sequence:

>1131_bases
ATGCGCAGTTTGTGCGGCCAACCGTACGCAGGCAGTTTCTTCCGACGTATTCCCTTCGCGGCGCAGATGTTTGAAACGCG
TTGTCGGTTTGGTCTGCGCAAACGTTTGCTCGTCGCAAAAGCGACACTCGATCCGTTCGGGACCCGCAACCACTGCCAGG
AGAGTCGCATGGATGTCAGCCTCCGCCGCCGCGTGCTAGCCGTCGCGGCCGTTTGCGTCGCCGTCGCCGCGGCCGGGCCG
TTCTCGGTCGCGCGCGCCGAGACCGCGCACAAGCCGAAGGTCGCCCTCGTGATGAAATCGCTCGCCAACGAGTTCTTCCT
CACGATGGAGAACGGCGCGAAGGAATACCAGAAACACAACGCGAGCCAGTTCGATCTCGTCACGAACGGCATCAAGGACG
AAACGGACACCGCGAGCCAGATCCGTATCGTCGAGCAGATGATCGTGTCGAAGGTCGACGCGATCGTGCTCGCGCCCGCC
GATTCGAAGGCGCTCGTGCCCGTCGTCAAGAAGGCCGTCGACGCGGGGATCATCGTCGTGAACATCGACAACCGGCTCGA
TCCGGACGTGCTCAAGTCGAAGGGCCTGAACGTGCCGTTCGTCGGCCCGGACAACCGCAAGGGCGCGCGGATGGTCGGCG
ACTATCTCGCGAAGCGGCTGAAGGCGGGCGATGCGGTGGGCATCGTCGAGGGCGTGCCGACGACCACCAACGCGCAGCAG
CGCACCGCGGGCTTCCAGGACGCGATGAAGGCGGCGGGCGCGAAGGTCGTGTCGGTCCAGTCGGGCGAATGGGAGATCGA
CAAGGGCAACGCGGTCGCCGCCGCGATGCTCAACGAATACCCGAACCTGAAGGCGCTCCTTTGCGGCAACGACAACATGG
CGATCGGCGCCGTGTCCGCGGTGCGCGCGGCGGGCCGCCAGGGCAAGGTGTATGTCGTCGGCTACGACAACATCAACGCG
ATCAAGCCGATGCTCAAGGACGGCCGCGTGCTCGCGACCGCCGACCAGTACGCGGCGAAGCAGGCGGTGTTCGGCATCGA
CACGGCGCTCAAGGCGCTCGCCGAGCATCGCAAGCAGGCCGACATGACGGGCGTCGTCGCGACGCCCGTCGATCTCGTGA
CGAAGCCGTAA

Upstream 100 bases:

>100_bases
GGATGTCTCCGCACAAACCCTTAAATGCCCGAATCGGCGTTGCGTAATGCGCAGAAAAAGCTGACGATAGGCGCTCCCGA
TATCAAGAAAAAGGACCGGG

Downstream 100 bases:

>100_bases
CCCGGCGCGGCGGCGCAGCGCGCCGCTCAAGAACGCCGCGAGGCGGCCGATATCAGGCTAGAGCGTGACCCAGGCCGCCT
CGCGTCCTCGTCCGCGCGGT

Product: putative ribose ABC transporter, periplasmic ribose-binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MRSLCGQPYAGSFFRRIPFAAQMFETRCRFGLRKRLLVAKATLDPFGTRNHCQESRMDVSLRRRVLAVAAVCVAVAAAGP
FSVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVEQMIVSKVDAIVLAPA
DSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQ
RTAGFQDAMKAAGAKVVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINA
IKPMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTKP

Sequences:

>Translated_376_residues
MRSLCGQPYAGSFFRRIPFAAQMFETRCRFGLRKRLLVAKATLDPFGTRNHCQESRMDVSLRRRVLAVAAVCVAVAAAGP
FSVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVEQMIVSKVDAIVLAPA
DSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQ
RTAGFQDAMKAAGAKVVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINA
IKPMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTKP
>Mature_376_residues
MRSLCGQPYAGSFFRRIPFAAQMFETRCRFGLRKRLLVAKATLDPFGTRNHCQESRMDVSLRRRVLAVAAVCVAVAAAGP
FSVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVEQMIVSKVDAIVLAPA
DSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQ
RTAGFQDAMKAAGAKVVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINA
IKPMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTKP

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=258, Percent_Identity=35.2713178294574, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790192, Length=306, Percent_Identity=31.0457516339869, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790674, Length=205, Percent_Identity=32.1951219512195, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788898, Length=290, Percent_Identity=26.551724137931, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40269; Mature: 40269

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLCGQPYAGSFFRRIPFAAQMFETRCRFGLRKRLLVAKATLDPFGTRNHCQESRMDVS
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LRRRVLAVAAVCVAVAAAGPFSVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHHHCC
ASQFDLVTNGIKDETDTASQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCEEEE
NIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQ
EECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
RTAGFQDAMKAAGAKVVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSA
HHCCHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCEEHHHHH
VRAAGRQGKVYVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQA
HHHCCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
DMTGVVATPVDLVTKP
CCCCEEECCHHHHCCC
>Mature Secondary Structure
MRSLCGQPYAGSFFRRIPFAAQMFETRCRFGLRKRLLVAKATLDPFGTRNHCQESRMDVS
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LRRRVLAVAAVCVAVAAAGPFSVARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHHHCC
ASQFDLVTNGIKDETDTASQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCEEEE
NIDNRLDPDVLKSKGLNVPFVGPDNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQ
EECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
RTAGFQDAMKAAGAKVVSVQSGEWEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSA
HHCCHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCEEHHHHH
VRAAGRQGKVYVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQA
HHHCCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
DMTGVVATPVDLVTKP
CCCCEEECCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]