| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is 126453777
Identifier: 126453777
GI number: 126453777
Start: 3321383
End: 3322525
Strand: Direct
Name: 126453777
Synonym: BURPS1106A_3403
Alternate gene names: NA
Gene position: 3321383-3322525 (Clockwise)
Preceding gene: 126452629
Following gene: 126454459
Centisome position: 83.27
GC content: 70.17
Gene sequence:
>1143_bases ATGCCGCGTCCGCTCCTGCATTTCGTCGCCGCCGCCACGTTCCCGTTCGTCGCCGCGCTCGCCGCCTGCGGCGGCGACGG CACCGCGCCCGCGCTCGAGCCCACACCGGCCGCCGTCGACGCCGGCTTCGTGTCCGGCCACGCACCGAATCCCGGACAGA ACGCCGGCGATTCGCCGGCGGCGCCCGCTCCCGCGCCCGGCAAATGGAAAAACGCGCGCGCGGGCGACATGCTCGAGGTC ACGCTCGGCGAGTTGCGTCCGACACAAGGCGCGCTCGGCTACGACCAGATCTATTACAAGCTCGGCCGCTACGAGCGGCA GCCGGACAAGAAGTTCGACGATTTCTGCGCGGACGACGGGCTTGGCGGCATCGCGCCGGACGGCTACACCGCGCAATCGG CGCTGCGCGACGCGGCGAGCTACGCCTGCGCGACGAGCGCCGCCGCACGCGATCGCTCGGTGCTCAACCCCGTCGTGATC GGGCCGAACGGCGACGCGCTGTACGTGACGGACGGGCACCACGGGCTGTCGACCTATTACGAGACGCCCGACGGCGGCGC GGCGCTGCGCGTGCACGTCGTCGTCAAGGACAACCTGGCCGATTACTCGGCCGCGGCGTTCTGGCAGCAGATGCAAAACC GCGGCTACACCCGCCTGAAGGACGGCGACGGCCGGCCCATCGCACCGGACCGGCTGCCCGCCGGCCTCGGCCTGAAGCGC GGCATGCAGGACGACCGCTACCGGTCGCTCGTCTATTTCACGCGCGACATCGGCTACGCGAAGCCGACGCAAGCCACCGA CTATCTCGAGTTCTACTGGGCGGACTGGCTGCGGCAACAGCCGCAGGCGTTCCCGCTCGCCGGCTACGACCTCACGCGCG CGGGCGCGACCGACCCTGATCCGGCGACGGCCGATACCGGCTATCTGAATGCGGTATGGAATGCGTCGGCGCGAATGGTC GCCTCGACCGATCCGGTGATCGATGGCAAGACGGGCGCGGACCTCGGCCGCGCCGACCAGATCAACGGCGGGAAGAAATA CGGCAAGGGGGAATTCGACAAGCTGCGCCAGCCGATCACGGCGGACAAGCCGGGCAAGATCGCGTACGCGCTCGATTACA AGTCCCGCCGCGGGCTGCGCTGA
Upstream 100 bases:
>100_bases TCACATCGATTCGTGATGCTGACGGGTCCGCGCTCGCGCGTCGATCGCGCGCCGCCGTCGCTGTCGCCTTCGTCCCACTC ATCATCGATTCCGATCGCCC
Downstream 100 bases:
>100_bases CGCGCGGCGGCCGCTGCAGGCGCGGCGGCCACGGCGGCCCGTTGGCCGCGGCGGCTATGGCCGGCCGCCGTGCGCTCACC CCGAAGAATGCCCCGCCCGT
Product: putative lipoprotein
Products: NA
Alternate protein names: ParB-Like Nuclease Family Protein; ParB-Like Nuclease
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MPRPLLHFVAAATFPFVAALAACGGDGTAPALEPTPAAVDAGFVSGHAPNPGQNAGDSPAAPAPAPGKWKNARAGDMLEV TLGELRPTQGALGYDQIYYKLGRYERQPDKKFDDFCADDGLGGIAPDGYTAQSALRDAASYACATSAAARDRSVLNPVVI GPNGDALYVTDGHHGLSTYYETPDGGAALRVHVVVKDNLADYSAAAFWQQMQNRGYTRLKDGDGRPIAPDRLPAGLGLKR GMQDDRYRSLVYFTRDIGYAKPTQATDYLEFYWADWLRQQPQAFPLAGYDLTRAGATDPDPATADTGYLNAVWNASARMV ASTDPVIDGKTGADLGRADQINGGKKYGKGEFDKLRQPITADKPGKIAYALDYKSRRGLR
Sequences:
>Translated_380_residues MPRPLLHFVAAATFPFVAALAACGGDGTAPALEPTPAAVDAGFVSGHAPNPGQNAGDSPAAPAPAPGKWKNARAGDMLEV TLGELRPTQGALGYDQIYYKLGRYERQPDKKFDDFCADDGLGGIAPDGYTAQSALRDAASYACATSAAARDRSVLNPVVI GPNGDALYVTDGHHGLSTYYETPDGGAALRVHVVVKDNLADYSAAAFWQQMQNRGYTRLKDGDGRPIAPDRLPAGLGLKR GMQDDRYRSLVYFTRDIGYAKPTQATDYLEFYWADWLRQQPQAFPLAGYDLTRAGATDPDPATADTGYLNAVWNASARMV ASTDPVIDGKTGADLGRADQINGGKKYGKGEFDKLRQPITADKPGKIAYALDYKSRRGLR >Mature_379_residues PRPLLHFVAAATFPFVAALAACGGDGTAPALEPTPAAVDAGFVSGHAPNPGQNAGDSPAAPAPAPGKWKNARAGDMLEVT LGELRPTQGALGYDQIYYKLGRYERQPDKKFDDFCADDGLGGIAPDGYTAQSALRDAASYACATSAAARDRSVLNPVVIG PNGDALYVTDGHHGLSTYYETPDGGAALRVHVVVKDNLADYSAAAFWQQMQNRGYTRLKDGDGRPIAPDRLPAGLGLKRG MQDDRYRSLVYFTRDIGYAKPTQATDYLEFYWADWLRQQPQAFPLAGYDLTRAGATDPDPATADTGYLNAVWNASARMVA STDPVIDGKTGADLGRADQINGGKKYGKGEFDKLRQPITADKPGKIAYALDYKSRRGLR
Specific function: Unknown
COG id: COG4318
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40628; Mature: 40496
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00099 THIOLASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPLLHFVAAATFPFVAALAACGGDGTAPALEPTPAAVDAGFVSGHAPNPGQNAGDSPA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC APAPAPGKWKNARAGDMLEVTLGELRPTQGALGYDQIYYKLGRYERQPDKKFDDFCADDG CCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCC LGGIAPDGYTAQSALRDAASYACATSAAARDRSVLNPVVIGPNGDALYVTDGHHGLSTYY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCEE ETPDGGAALRVHVVVKDNLADYSAAAFWQQMQNRGYTRLKDGDGRPIAPDRLPAGLGLKR ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHC GMQDDRYRSLVYFTRDIGYAKPTQATDYLEFYWADWLRQQPQAFPLAGYDLTRAGATDPD CCCCHHHHEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC PATADTGYLNAVWNASARMVASTDPVIDGKTGADLGRADQINGGKKYGKGEFDKLRQPIT CCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC ADKPGKIAYALDYKSRRGLR CCCCCCEEEEEECCCCCCCC >Mature Secondary Structure PRPLLHFVAAATFPFVAALAACGGDGTAPALEPTPAAVDAGFVSGHAPNPGQNAGDSPA CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC APAPAPGKWKNARAGDMLEVTLGELRPTQGALGYDQIYYKLGRYERQPDKKFDDFCADDG CCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCC LGGIAPDGYTAQSALRDAASYACATSAAARDRSVLNPVVIGPNGDALYVTDGHHGLSTYY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCEE ETPDGGAALRVHVVVKDNLADYSAAAFWQQMQNRGYTRLKDGDGRPIAPDRLPAGLGLKR ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHC GMQDDRYRSLVYFTRDIGYAKPTQATDYLEFYWADWLRQQPQAFPLAGYDLTRAGATDPD CCCCHHHHEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC PATADTGYLNAVWNASARMVASTDPVIDGKTGADLGRADQINGGKKYGKGEFDKLRQPIT CCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC ADKPGKIAYALDYKSRRGLR CCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA