| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126453710
Identifier: 126453710
GI number: 126453710
Start: 1568463
End: 1571303
Strand: Direct
Name: 126453710
Synonym: BURPS1106A_1615
Alternate gene names: NA
Gene position: 1568463-1571303 (Clockwise)
Preceding gene: 126452024
Following gene: 126452576
Centisome position: 39.33
GC content: 71.14
Gene sequence:
>2841_bases ATGTCGATCCCCACTGACGTTCTGCAAGCACTCTTCGGCGGCTGGTCGCAACACGACCGCTTTCTCTGGATCACGACGCC GCTCGGCGCGAACGCGCTCGTCGCGGAAAGCCTGCACGGCTGGGAGGCGCTCGACGATGGCGGCTTCCGTTTGCAGCTCA CCGCGCTCGCCGAGCATCCGTCGCTGCCGCTCGCGCAACTGATCGGCGCGCCGATCCTGATCGAATGGCAGGCGCAGGAA GGGCGCGACGCGCGCCGGCCGTTCCACGGCCACGTGATCGCCGCCGAGCTCGTCGGCTACAACGGCGGCCTCGCACGCGT GCGGCTCGTCGTCGAGCCGTGGCTCACGCTGCTGCGGCAGCGCGTCGACAGCTACAACTATCTGGACGCGAGCGTCGTCG AGATCAGCGAACAGGTGTTCCGCCGTTACGCGCGCGGCGCGATCGCGCCCGCATGGCGATGGGCGCTCGCCGATGCGGCG AAGTACCCGAAGCGCAGCTTGACCGCGCAAGCCGGCGAGTCCGATTTCGACTTCCTCGAGCGGCTCTGGGCGGAGGAGGG CATCTTCTACTGGTTCGAGCACGAAGGCGACGCGCGCGCATCGAGCCTCGGCAAGCACACGCTCGTGCTCGCCGATTCGA ATCAGCGCTTCGCGCCGGACGAACCGGAGATCGTCGGCTTTCATCAGACGAGCGACGACGACCCGCAAGGCTGCATCCAG CACTTCGTGCACGCGCGGCGTTGGCGCATCGGCAGCGTCGCGCGCGCGAGCTGGGATCACCGCAGCCTGTCGACGCGTCC GACGGGCGCGCGCGCGAACGGCGCGGTCGCGCCGGGCGAGGATCGCGACGTCGCGGGCCCGTACGCATACCAGACGGGCG CGATCGGAGACCGGCGCGCGCAGCAGCAACTCGACGCCCAGCGCGTGGCCGCGCTGCGGAGCGAAGGCCGCAGCACGCGC CGCGATCTGCGGCCCGGGCTGCGTTTTGCGATCGCGCATCATCCGACGCTCGGCGTATCGGATGCGTTCATCTGCCTGCG CGTCGAGCATTCGGCGCGCGCGAACGTCGATGCGACCGTGCGCAGCGCGATCGAACAGCGCCTCGGCGCGATTGCGTCGA TCGCCGGCGCCGCGCCGGTGCCGCATGGCCCCGCGAGCGCGCTGAATGCGGCGCTCGGCGCCGATACGCATCACGGCGGA TCGCTGATGCGGGACGACGCCGTCTATCGCAATCGCTTCGTCGCGTTGCCCGCCGAGCAGACGTATCGGCCGCTCGCCGC ATCCGGCCATGGCGCGCGCATGCACCCGGTCGCCGTGATGCCGGGGGCGCAGACGGCGATCGTCGTGGGCGCGGGCGATC CCGTTCACACCGACCGGGATCACCGGATTCGAATCCAGCACCACGCGCAGCGCGGCGAGAATGCGGCGAGCCGCGACGAT CACCCGCATGCGGCGAACGCGCCGGCGAACCGTGGCGCGGGCACGTGGACGCGGATGATGACGCCCGTGGGCGGCGATAA CTGGGGTGGGGTGAGCGTGCCGCGCGTCGGGCAGGAAGTGTGGACCGAATGGCTCGAAGGCCAGCCCGACCGGCCGGTTG CGGTGGCCGCGCTCTACAACGGCCGCGGCAACGCGCACGCGCAGCACAACGCGCAGGCGGGAGGGCCGAGCGGCAGCACC GGCAATGCGGCCGCATGGTTCGCCGGCAATGCGCATGCGGCGGTGCTGACGGGTTTCAAGACGCAGGACATGAGCATGAG CCAGCAAGGCACGGGCGGCTATCGGCAATTCATGCTCGACGATACGGCGGGCCAGTCGAGCGCGCGCCTGTACACGACGG ACCGCAACAGCGGGCTCACGCTCGGGCACGTGAAGCAGACGCAGGACAACCGGCGCCAGGCCGATCGCGGCTATGGCGCG GAACTGGCGACGGATGCCGCCGGCGCGCTGCGCGGCGGCGCGGGGCTCTTGATCAGCACGGCGCCCGGCGTGAGCCAGAT GGATGCGAGCGCGCCGAGCCAGGTGCTCGCTCAGCATCGACAGACGTTGCAAAGCCTCGCGGCGCTCGCGCACAAGCAGG GCGCGGAGCCGGGCGGTGCGGTGCCCGAGGCGGCGGGCGGAGCGGGCGCGGCGTCGGCGTCGACGGGGGCGGCGGCGGAC AAGCCTTTGCCGGCCGTCGATGGCATCGAGCAGAGCCGTGAAGCGATCGGCGCGACGCGTGAAGGAAGCGGCGGCGATAC GGCAGGCGGCGGGGGCGGCGGCGCGATTGCGTGGAGCAAGCCGCATCTCGTCGCACACGGCGAGGCGGGGCTGGCCGCGA TGTCGGCGAAGAGCCACGTGTGGGTGTCGGGTACCGAGACGGTGTTGAGCGCCGGACAGGACGTGCAATTGACGGCGAAG GGCAAGACGAGCGTCGTCGCGAATCACGGCATCTCGCTGTATACGCAGGGCGCGGCGGGCGACGGGCGGCCGGTTGCCGG CCGGGGCATCGCGTTGCACGCGGCGTCCGGCGCGGTGAGTGTGCAAGCGCAGAACGCCGGCAAGCTGAGCGCGAGCGCGC AGAAGGCGGTGACGCTCGCGAGCGCGCAAGGCAGCGCGTCCGTGCAGGCGCAGCAGCGCGTCCTGCTGAGCGCGGCGAAG GCCTATCTGAAGATGGAAGGCAACGACATCGTCGTCGGCGCGCCGGGGCGCGCGGATTTCAAGGCGGCGGCGCATCAGTT GACGGGGCCGAAGAGCGCGGGGGCGTCAGCGCAAATGCCGAAGAGCGAACCGAAGCTGTGCGAGTACAAGACGCGCGCGG CCGACGTTGCTCACGAAGGCACGATGAAGTCGGCGGCTTGA
Upstream 100 bases:
>100_bases ACCCGCGCTTCGCGCCGCAAGCGCTCGCCGCGCCGCGCCCCAATACCTGGACCCGCGCCGCGAAAACGTCGCGCGCGGGG CCTATTGAACGGAACGAGCC
Downstream 100 bases:
>100_bases CATGGTCGCGTTCGATCTCGACTCGAGGAATTTTCTGGCGTTTCAGTACGCGGTGATCAACCCGTTGCAAGTCGACGAAG AGGCTTGGGCGGACCTTGAG
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Vgr-Related Protein; VgrG Protein; Rhs Element Vgr Family Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Family Protein; Rhs Element Vgr Related Protein; Rhs Element Vgr-Related Protein; Conserved Hypothethical Protein; Rhs Element VGR-Related Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; VGR-Like Protein; Fimbrial Operon Related Protein; Vgr Protein; VgrG Family T6SS G; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 946; Mature: 945
Protein sequence:
>946_residues MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQE GRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAA KYPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HFVHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTR RDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGG SLMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGST GNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGA ELATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAK GKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSVQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAK AYLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGASAQMPKSEPKLCEYKTRAADVAHEGTMKSAA
Sequences:
>Translated_946_residues MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQE GRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAA KYPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HFVHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTR RDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGG SLMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGST GNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGA ELATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAK GKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSVQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAK AYLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGASAQMPKSEPKLCEYKTRAADVAHEGTMKSAA >Mature_945_residues SIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQEG RDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAK YPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQH FVHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTRR DLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGS LMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDDH PHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGSTG NAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAE LATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAADK PLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAKG KTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSVQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKA YLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGASAQMPKSEPKLCEYKTRAADVAHEGTMKSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99010; Mature: 98879
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHP CCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCEEEEEEECCCC SLPLAQLIGAPILIEWQAQEGRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQ CCCHHHHCCCCEEEEEECCCCCHHCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHH RVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAKYPKRSLTAQAGESDFDFLE HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH RLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HHHHCCCEEEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHH HFVHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRA HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH QQQLDAQRVAALRSEGRSTRRDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATV HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHH RSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGSLMRDDAVYRNRFVALPAEQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCEEEECCCHH TYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCCCC HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYN CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEC GRGNAHAQHNAQAGGPSGSTGNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE DTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAELATDAAGALRGGAGLLIST CCCCCCCCEEEEECCCCCCEEEECHHCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEC APGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCCEE WVSGTETVLSAGQDVQLTAKGKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVS EECCCHHHHHCCCCEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEECCCEEE VQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKAYLKMEGNDIVVGAPGRADF EEECCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHH KAAAHQLTGPKSAGASAQMPKSEPKLCEYKTRAADVAHEGTMKSAA HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHP CCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCEEEEEEECCCC SLPLAQLIGAPILIEWQAQEGRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQ CCCHHHHCCCCEEEEEECCCCCHHCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHH RVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAKYPKRSLTAQAGESDFDFLE HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH RLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HHHHCCCEEEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHH HFVHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRA HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH QQQLDAQRVAALRSEGRSTRRDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATV HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHH RSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGSLMRDDAVYRNRFVALPAEQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCEEEECCCHH TYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCCCC HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYN CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEC GRGNAHAQHNAQAGGPSGSTGNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE DTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAELATDAAGALRGGAGLLIST CCCCCCCCEEEEECCCCCCEEEECHHCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEC APGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCCEE WVSGTETVLSAGQDVQLTAKGKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVS EECCCHHHHHCCCCEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEECCCEEE VQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKAYLKMEGNDIVVGAPGRADF EEECCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHH KAAAHQLTGPKSAGASAQMPKSEPKLCEYKTRAADVAHEGTMKSAA HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA