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The map label for this gene is rhaR [C]

Identifier: 126453663

GI number: 126453663

Start: 3328132

End: 3329019

Strand: Direct

Name: rhaR [C]

Synonym: BURPS1106A_3411

Alternate gene names: 126453663

Gene position: 3328132-3329019 (Clockwise)

Preceding gene: 126454459

Following gene: 126455251

Centisome position: 83.44

GC content: 70.5

Gene sequence:

>888_bases
ATGATCGACCGTCTGAAAGACCTCCTCGCGCGTTTCGAACTGCACGCCCGCGTATTTCACTTCGGTGCGCTGCCCGGCGC
GTCGACATTCGAGATTGGCGCGGACGGCTTCCATATGCACCTGGTGCGCACGGGGGCGGTCAACGTGACGGGCGAGGCGC
TCGGGCGGCACGCGGTGCCCGAGCCGGGCGCGGTGTTCATCGGGCGCCCCGGCAAGTACCGGATCGAGGCGCGCGGCGAC
GCGCCTGTCGAAGTCTTGTCCGCGGCGATCGAATTCGGGCTCGGCGATGAGAATCCGCTGTTGCGCGGCTTGCCCGATCT
GCTCGCGATTCCGCTTGCGTCGATGTCGCCGCTCGGCGGCGTCCAGCAGGCGCTCTTCGCGGAAGCGAGCGCGCCCGCGT
GCGGGCATGACACGGTGATCAACCGGCTGACCGAGGTGCTCGTCGTGCAGTTGCTGCGCTTCGTGATGCGCAACCGGCTG
GTGGCGAGCGGATCGCTCGCCGGCCTGTCCGACGCGCGGCTCGCGAAGGCGTTGAACGCGATGCACGCGGATCCGGCGCT
GCCGTGGTCGCTCGAGCGGATGGCTGCGATCGCGGGCATGTCGCGCTCGCGATTCGCCGCGCACTTCGCGGGCACGGTCG
GCCTGCCGCCCGGCGAATACCTGCTCCAATGGCGCGTCGGGCTCGCGAAGACGCTGCTCAGGCGCGGCTATGCGGTGAAG
GAAATCGCGCCGGAAGTCGGCTACGGCAGCGCGAGCGCGCTCACGCGCGCATTCGCGCAATCCACCGGGCAAGCGCCGAC
CGATTGGCTCGCGCGGGCGGGCGACGCACCTGGCGCGATCGGAGCGGCAGCCGATTCGATGCCGGACGTCGGCGTGCGAG
CCGCCTGA

Upstream 100 bases:

>100_bases
GCCCTCCTCGTCATGCTGGATAGTCAGCGGAATTGCCAATGTAGCGCACGTATTGAGACAATATGCGTCGACAAATCTCA
ATTGCATGACCAATCGTCCC

Downstream 100 bases:

>100_bases
GTGGACACCGAAAGGCTAAACGGGAGCGAAAGAGCGGAAAAGGACGGTAAAACCGAAAGAAGGACGAACACTGTCTCGAC
GCGCGATGCGCCGCCTTCAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGAVFIGRPGKYRIEARGD
APVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRL
VASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQWRVGLAKTLLRRGYAVK
EIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA

Sequences:

>Translated_295_residues
MIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGAVFIGRPGKYRIEARGD
APVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRL
VASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQWRVGLAKTLLRRGYAVK
EIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA
>Mature_295_residues
MIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGAVFIGRPGKYRIEARGD
APVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRL
VASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQWRVGLAKTLLRRGYAVK
EIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30925; Mature: 30925

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVP
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCEECHHHHCCCCCC
EPGAVFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGG
CCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCH
VQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHH
MHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQWRVGLAKTLLRRGYAVK
HCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
EIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA
HHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVP
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCEECHHHHCCCCCC
EPGAVFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGG
CCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCH
VQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHH
MHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQWRVGLAKTLLRRGYAVK
HCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
EIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA
HHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]