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The map label for this gene is intB [H]

Identifier: 126453594

GI number: 126453594

Start: 1403655

End: 1404869

Strand: Reverse

Name: intB [H]

Synonym: BURPS1106A_1442

Alternate gene names: 126453594

Gene position: 1404869-1403655 (Counterclockwise)

Preceding gene: 126453977

Following gene: 126452754

Centisome position: 35.22

GC content: 62.22

Gene sequence:

>1215_bases
ATGCCACTTACCGATACAGCCGTGAAGAACGCCAAGCCGGCGGCCAAGCCCTACAAGCTCACCGACGGCGGCGGGATGTA
TTTGCTGGTACAGCCCAACGGCGCCAAGTACTGGCGCATGGCTTATCGACTGCACGGTAAGCAAAAACTGCTGGCGATCG
GCGTCTATCCGGCAGTCGGGCTGGCGACGGCGCGCGAGCGACGCGATGATGCACGGAAGAAAGTCGCAGCTGGAATCGAT
CCGAGCGCGGCGAAGCGCGTCGAGAAGCGAGTGGCGCGTCTTGCTGCCAGCAATACGTTCGAGGCCGTCGCGCACGGGTG
GATGAACGAACGCAAGACGGTCGTTGAAATTGGCCAATACGAGAAAACCCTCGCGCGCTTCGACAGCGACGTGTTTCCGT
GGCTGGGCAAGCGTCCCATCGCAGAAGTTGATGCGCCCGAGATTCTCACGGCGCTGAAGCGGATAGACAGCCGCGGTGCC
CGATATACGGCGCATCGCGTGCGGAGCGAAATCAGCCGCGTGTTTCGGTATGGCATCAAGGAAGGCTACTGCAAGGCCGA
CCCGGCTCGAGATTTGGTGGATGCGATCCCACCAGCCCAGACCACTCACTTCGCCGCGATCACCGATCCGGCCAAGGTCG
CCGAGATGCTGCGCGCTTTCGACGGCTTCTCAGGCACCTTCCCTGTCCTCTGCGCGCTCAAGCTCGCTCCGCTGCTATTT
GTGCGCCCTGGTGAGCTGCGGCAGGCGCAATGGGCGCAATTCGACCTCGACAAGGGCGAATGGCGCTACCTCGTGACGAA
AACGAAGACCGAGCATCTCGTGCCGCTCTCGCTGCAAGCGATCGCAATCCTGCGCGAGCTACACGCGCTCACCGGCGCCG
GCCGCTATGTGTTTCCAGGTGCGCGGGATCGCAACCGGCCGATGAGCGAGGCTGCTATCAACGCGGCGCTGAGACGTCTG
GGCTACGACACCCGTACAGAGATCACCGGGCACGGATTCCGCGCGATGGCGCGAACGATCCTGCATGAGGAGCTTGAGCA
GAAGCCCGAGGTGATTGAGCACCAACTCGCGCACACGGTTCCGGATAACCTCGGCTCGGCTTACAACCGAACGAAGTTCA
TCAAGAAGCGCCGCGAGATGATGCAGAAGTGGGCAGATTATCTCGACTGTCTGAAGGCCGGCGCGGAGGTGATTCCGATA
GGCGCGGCCAGGTAA

Upstream 100 bases:

>100_bases
TCATGGCGTCTCGTTGGGGCACATTGCATCTCGCAATGGAGTTGGTATATTAGTTGGTACGGAAGGTCAATTCGTTGGTA
TCTACGGACGTTGACGAGCC

Downstream 100 bases:

>100_bases
ATGAATTGTTTTACCGTTGCCTGACGGCATCAGGCAAAAGCGGCAGTCCGCGCGTTGACGCGCGCGGATCGCCTGACCAA
AACGTGGCCTATACGGAGGC

Product: phage integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVGLATARERRDDARKKVAAGID
PSAAKRVEKRVARLAASNTFEAVAHGWMNERKTVVEIGQYEKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGA
RYTAHRVRSEISRVFRYGIKEGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLF
VRPGELRQAQWAQFDLDKGEWRYLVTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPGARDRNRPMSEAAINAALRRL
GYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTVPDNLGSAYNRTKFIKKRREMMQKWADYLDCLKAGAEVIPI
GAAR

Sequences:

>Translated_404_residues
MPLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVGLATARERRDDARKKVAAGID
PSAAKRVEKRVARLAASNTFEAVAHGWMNERKTVVEIGQYEKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGA
RYTAHRVRSEISRVFRYGIKEGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLF
VRPGELRQAQWAQFDLDKGEWRYLVTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPGARDRNRPMSEAAINAALRRL
GYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTVPDNLGSAYNRTKFIKKRREMMQKWADYLDCLKAGAEVIPI
GAAR
>Mature_403_residues
PLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVGLATARERRDDARKKVAAGIDP
SAAKRVEKRVARLAASNTFEAVAHGWMNERKTVVEIGQYEKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGAR
YTAHRVRSEISRVFRYGIKEGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLFV
RPGELRQAQWAQFDLDKGEWRYLVTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPGARDRNRPMSEAAINAALRRLG
YDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTVPDNLGSAYNRTKFIKKRREMMQKWADYLDCLKAGAEVIPIG
AAR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=394, Percent_Identity=34.5177664974619, Blast_Score=234, Evalue=9e-63,
Organism=Escherichia coli, GI145693166, Length=402, Percent_Identity=35.5721393034826, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1788974, Length=401, Percent_Identity=33.4164588528678, Blast_Score=223, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45198; Mature: 45067

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVG
CCCCCHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHH
LATARERRDDARKKVAAGIDPSAAKRVEKRVARLAASNTFEAVAHGWMNERKTVVEIGQY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHH
EKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGARYTAHRVRSEISRVFRYGIK
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLF
CCCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHE
VRPGELRQAQWAQFDLDKGEWRYLVTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPG
ECCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCC
ARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTV
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDNLGSAYNRTKFIKKRREMMQKWADYLDCLKAGAEVIPIGAAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
>Mature Secondary Structure 
PLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVG
CCCCHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHH
LATARERRDDARKKVAAGIDPSAAKRVEKRVARLAASNTFEAVAHGWMNERKTVVEIGQY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHH
EKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGARYTAHRVRSEISRVFRYGIK
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLF
CCCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHE
VRPGELRQAQWAQFDLDKGEWRYLVTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPG
ECCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCC
ARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTV
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDNLGSAYNRTKFIKKRREMMQKWADYLDCLKAGAEVIPIGAAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]