| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is fanD [H]
Identifier: 126453579
GI number: 126453579
Start: 1047336
End: 1049636
Strand: Reverse
Name: fanD [H]
Synonym: BURPS1106A_1069
Alternate gene names: 126453579
Gene position: 1049636-1047336 (Counterclockwise)
Preceding gene: 126451911
Following gene: 126453225
Centisome position: 26.32
GC content: 71.75
Gene sequence:
>2301_bases ATGCTCGCCGAGGCGGCCGCGCCGCCCGCGCGGTCCGCATTGCCCGGGCCGACGACGAGCCTGCCGGTGCCGAGCGCCGA CGCGACCGTCCCCGCGAGCGACCTGTATCTCGGCGTCTCGCTGAACGGCCAGCCGACGCGCCTGATCGTGCACTTCGTCG TCGCCGACGGGCGCTTCTACGCGAGCCAGGACGATCTGAACGACATCGGCGTCGCGACGTCACGGCTGCGACAGCCGGCG AACGCGCTCATCGCGCTCGATGCGCTCGACGGCCTGCGCTACCGCTACGACGCCGCGCGCCAGACGATCGATCTCGACGC GCCCGATTCGCTGCGCATCCCGCACACGTTCGACACACGCGCGCTCGCGCCGACGGTCCCCGCGAGCGCGGGCCGCGGCC TCGTGCTGAACTACGACCTCTATGCGCAGACGGCCGATCGCGCGAGCGCGGCGCTCTGGCACGAGGCGCGCTACTTCGAT CCGGCCGGCGTCTTCAGCAGCACGGGCGTCGCGTATCTTCAGCACGGCGGCCAGCGCTACACGCGCTACGACACCTCGTG GAGCATGTCCGATCCGAAATCGCTGACGACGACGCAGTTCGGCGACACGATCTCGTCGTCGCTCGCCTGGACGCGCTCGC TGCGCGTCGCCGGCCTGCAATGGCGCAGCAACTTCGCGCTGCGTCCGGACCTCGTGACGTTCCCGGTGCCGGCGCTCGCG GGCACGGCCGTCGTGCCGTCGACCGTCGATCTGTACGTGAACGGCGTGCGCCAGTTCAGCGGCGACGTGCCGAGCGGCCC GTTCGTCATCAACAGCGTGCCGGGCATCACGGGCGCGGGCAACGCGACCGTGGTCACGCGCGACGCGCTCGGGCGCACGA TCGCGACGTCGCTGCCGCTCTACATCGACACGCGGATGCTCGCGCCCGGCCTCGCGAGCTATTCGGTCGAGGCGGGTTTC CTGCGGCGCGCGTGGGGGCTGCGCTCGTTCGACTACGCGCCCCGCCCGGCCGTGAGCGCGACCGCGCGCTACGGCGTGAG CGAGCGCCTGACCGTCGAGGCGCACGCGGAGGCGACGCCCGGCCTCTACAACGCGGGCGCGGGCGCGCTCGTGCGGCTCG GCGGCGCGGGGGTCGCGAGCGCGTCGGCCGCGCAAAGCGCCGGGCGCCTCGCGGGCACGCAGGCCGGCCTCGGCTACCAG CTCGTGCTGCCGCGCTTTTCGATCGACGCGCAAACGCTGCGCGCGTTCGGCCAATACGGCGACCTCGCCGCGCGCGACGG CACGCCGGTGGCGAGCGCGACCGATCGCGTCACGCTGTCGCTGCCGTTCATCCGCTCGCAGACGTTCGCGATCAGCTACA TCGGCCTCAGGTATCCGGGCCTGCAAACCGCGCGGATCGGCTCCGTGTCGTACTCGGTCAACGTCGGCAACCTTGCGTCG ATCAACGTCAGCGCGTTCCAGGACTTCCACCAGCACGACTCGCGCGGCGTGTTCGTGAGCCTGAACGTCGCGCTCGGCAA CCGGACGTCGGTCAACGCGAACGTCGGCCGGCAGAACGGCAAGACGGTCTACAACGTGAACGCGATGCGCGCGCCCGACT ACGGCGGCGGCTTCGGCTGGAGCGCGCAGACGGGCGACGCGGGCGGCGTGCGCTACGGCCAGGCGCAGGCGCGATATCTC GGCCGCTCGGGCGAGGTGGCGGCGCTCGCGCAGACGATCGCCGGACATCAGAACGCGGCGCTCGACGTGGCGGGCGCCGT CGTGCTGATGGACGGCCGCGCGCTGCTCACGCGGCGCATCGACGACGGCTTCGCGCTCGTGTCGACCGACGCTTCGCCGG GCGTGCCGGTGCTGCACGAGAATCGCCTGATCGGCACGACCGACCGCAACGGCTACCTGCTGATTCCGGATCTGAACGCG TACCAGAACAACCGGATCGGCATCGACACGTTGAAGCTGCCGCTCGACGCGCGCGTATCCGACACGATTCGCAACGTCGT TCCGCAGTCGCGCTCGGGCGTGCTCGCGCATTTCGCGATCGCGCGCGAACAGTCGGCGTCGATCGTCCTCGAGGATGCGT CCGGCGCGCCGCTGCCGGCCGGGCTGTCGGTCTCGCATCGCGAGAGCGGCGCGAGCACGATCGTCGGCTACGACGGGCTC ACGTTCGTCACGGGCCTCGCGGCCGCCAATCACCTGGAGATCACGGGCCACGGCAAGCGCTGCGCGGTCGCGTTCGACTA TGTGCGCCCGGCCGACGGCACGCCGCCGACGATCGGGCCGCTCGTCTGCGACCTGAAGTGA
Upstream 100 bases:
>100_bases GCGCCTATTCGCATCGCCGTCGCTCCCGGCCTCTCCCACGCCGCCGCCGCCCGCCCCCGGCGCATCACCCCGCTCCGCCG CCTCGTCAGCGGCCCGGACT
Downstream 100 bases:
>100_bases CGCGAGCGACGCGCGCATGCGCGCCCCCCGATCTCCGGCGCCCCTTTCCCCACCCGCCCGCCCCCGCCGGCCGGGCGAGC GCCGGCATCGGCCGGCCGCC
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 766; Mature: 766
Protein sequence:
>766_residues MLAEAAAPPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPTRLIVHFVVADGRFYASQDDLNDIGVATSRLRQPA NALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTVPASAGRGLVLNYDLYAQTADRASAALWHEARYFD PAGVFSSTGVAYLQHGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRVAGLQWRSNFALRPDLVTFPVPALA GTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSVEAGF LRRAWGLRSFDYAPRPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQ LVLPRFSIDAQTLRAFGQYGDLAARDGTPVASATDRVTLSLPFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNVGNLAS INVSAFQDFHQHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGWSAQTGDAGGVRYGQAQARYL GRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHENRLIGTTDRNGYLLIPDLNA YQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGL TFVTGLAAANHLEITGHGKRCAVAFDYVRPADGTPPTIGPLVCDLK
Sequences:
>Translated_766_residues MLAEAAAPPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPTRLIVHFVVADGRFYASQDDLNDIGVATSRLRQPA NALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTVPASAGRGLVLNYDLYAQTADRASAALWHEARYFD PAGVFSSTGVAYLQHGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRVAGLQWRSNFALRPDLVTFPVPALA GTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSVEAGF LRRAWGLRSFDYAPRPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQ LVLPRFSIDAQTLRAFGQYGDLAARDGTPVASATDRVTLSLPFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNVGNLAS INVSAFQDFHQHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGWSAQTGDAGGVRYGQAQARYL GRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHENRLIGTTDRNGYLLIPDLNA YQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGL TFVTGLAAANHLEITGHGKRCAVAFDYVRPADGTPPTIGPLVCDLK >Mature_766_residues MLAEAAAPPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPTRLIVHFVVADGRFYASQDDLNDIGVATSRLRQPA NALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTVPASAGRGLVLNYDLYAQTADRASAALWHEARYFD PAGVFSSTGVAYLQHGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRVAGLQWRSNFALRPDLVTFPVPALA GTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSVEAGF LRRAWGLRSFDYAPRPAVSATARYGVSERLTVEAHAEATPGLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQ LVLPRFSIDAQTLRAFGQYGDLAARDGTPVASATDRVTLSLPFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNVGNLAS INVSAFQDFHQHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGWSAQTGDAGGVRYGQAQARYL GRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRIDDGFALVSTDASPGVPVLHENRLIGTTDRNGYLLIPDLNA YQNNRIGIDTLKLPLDARVSDTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGL TFVTGLAAANHLEITGHGKRCAVAFDYVRPADGTPPTIGPLVCDLK
Specific function: Involved in the export and assembly of K99 fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789533, Length=167, Percent_Identity=28.7425149700599, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 80473; Mature: 80473
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAEAAAPPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPTRLIVHFVVADGRFY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEE ASQDDLNDIGVATSRLRQPANALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTR ECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCEEECCCCCCEECCCCCCCC ALAPTVPASAGRGLVLNYDLYAQTADRASAALWHEARYFDPAGVFSSTGVAYLQHGGQRY CCCCCCCCCCCCCEEEEEEHEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCEE TRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRVAGLQWRSNFALRPDLVTFPVPALA EEECCCCCCCCCCCCEEECCCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCEECCCHHHC GTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPL CCEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHCCHHHHCCCE YIDTRMLAPGLASYSVEAGFLRRAWGLRSFDYAPRPAVSATARYGVSERLTVEAHAEATP EEECHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCC GLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQLVLPRFSIDAQTLRAFGQYG CCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCC DLAARDGTPVASATDRVTLSLPFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNVGNLAS CEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEEEECCEEEEEECCCEEE INVSAFQDFHQHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGW EEHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCC SAQTGDAGGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRI CCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEC DDGFALVSTDASPGVPVLHENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVS CCCEEEEECCCCCCCCEEECCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHH DTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGL HHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCEEEECCCH TFVTGLAAANHLEITGHGKRCAVAFDYVRPADGTPPTIGPLVCDLK HHHHHHHCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEECC >Mature Secondary Structure MLAEAAAPPARSALPGPTTSLPVPSADATVPASDLYLGVSLNGQPTRLIVHFVVADGRFY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEE ASQDDLNDIGVATSRLRQPANALIALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTR ECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCEEECCCCCCEECCCCCCCC ALAPTVPASAGRGLVLNYDLYAQTADRASAALWHEARYFDPAGVFSSTGVAYLQHGGQRY CCCCCCCCCCCCCEEEEEEHEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCEE TRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRVAGLQWRSNFALRPDLVTFPVPALA EEECCCCCCCCCCCCEEECCCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCEECCCHHHC GTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPL CCEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHCCHHHHCCCE YIDTRMLAPGLASYSVEAGFLRRAWGLRSFDYAPRPAVSATARYGVSERLTVEAHAEATP EEECHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCC GLYNAGAGALVRLGGAGVASASAAQSAGRLAGTQAGLGYQLVLPRFSIDAQTLRAFGQYG CCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCC DLAARDGTPVASATDRVTLSLPFIRSQTFAISYIGLRYPGLQTARIGSVSYSVNVGNLAS CEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEEEECCEEEEEECCCEEE INVSAFQDFHQHDSRGVFVSLNVALGNRTSVNANVGRQNGKTVYNVNAMRAPDYGGGFGW EEHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCC SAQTGDAGGVRYGQAQARYLGRSGEVAALAQTIAGHQNAALDVAGAVVLMDGRALLTRRI CCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEC DDGFALVSTDASPGVPVLHENRLIGTTDRNGYLLIPDLNAYQNNRIGIDTLKLPLDARVS CCCEEEEECCCCCCCCEEECCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHH DTIRNVVPQSRSGVLAHFAIAREQSASIVLEDASGAPLPAGLSVSHRESGASTIVGYDGL HHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCEEEECCCH TFVTGLAAANHLEITGHGKRCAVAFDYVRPADGTPPTIGPLVCDLK HHHHHHHCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2564179; 1713284 [H]