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The map label for this gene is atoC [C]

Identifier: 126453538

GI number: 126453538

Start: 159578

End: 160261

Strand: Direct

Name: atoC [C]

Synonym: BURPS1106A_0168

Alternate gene names: 126453538

Gene position: 159578-160261 (Clockwise)

Preceding gene: 126453271

Following gene: 126454381

Centisome position: 4.0

GC content: 69.01

Gene sequence:

>684_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTCAGCGACGAAGGGCACGT
CGTCGACGTCGCGGAGAACGCGCAAGCCGCGCGCGACTACCGGCTGCGGCAGGCGCCCGATCTCGTGCTGCTCGACATCT
GGATGCCCGACACCGACGGCGTCACGTTGCTGAAGGAATGGGCGAGCCAAGGACAACTGACGATGCCCGTCATCATGATG
TCGGGGCACGCGACGATCGACACCGCCGTCGAGGCGACGAAGATCGGCGCGCTCGATTTTCTCGAGAAGCCGATCACGCT
GCAGAAGCTGCTGAAGTCGGTCGAGCACGGTCTCGCGCGCGGCGCGGCGCCGCTGCCCGCGAGCGCGGCGGCGAAGCCCG
CGGCGGGGGCCGCGGTCGCGTCGGCGGCCGCGCTGCCGACGCTCGGCGACGATCCGGCCGTGGCGCTCGCGGGCCAGACG
ACGGCCGCGATCCCGTTCGACATCCCGCTGCGCGAGGCGCGCGACGCGTTCGAGCGCGCGTACTTCGAATATCACCTCGC
GCGCGAGAACGGCAGCATGACGCGCGTCGCGGAGAAGACGGGCCTCGAGCGCACGCACCTGTACCGCAAGCTCAAGCAGC
TCGGCGTCGAGCTCGGCAAGAAGCCGGCCGAAGGCGCGGCATAA

Upstream 100 bases:

>100_bases
CCTGCAGCTCGCGGACGATACGGCGGGCGCCGGGGGCGGAACGAACGGCGGCACGGCACCCGCCAAGACAAGAGCAACTG
TGCAGACAAAGGCAGCGTAA

Downstream 100 bases:

>100_bases
ATTTTTTGCACAAAGGGCTTGATCGGTGTTTGGCGCATTGCTATAATCTTTTTTCTTCGTGGCCCGGTAGCTCAGTTGGT
AGAGCAGCGGATTGAAAATC

Product: Fis family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDGVTLLKEWASQGQLTMPVIMM
SGHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLARGAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQT
TAAIPFDIPLREARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVELGKKPAEGAA

Sequences:

>Translated_227_residues
MATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDGVTLLKEWASQGQLTMPVIMM
SGHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLARGAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQT
TAAIPFDIPLREARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVELGKKPAEGAA
>Mature_226_residues
ATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDGVTLLKEWASQGQLTMPVIMMS
GHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLARGAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQTT
AAIPFDIPLREARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVELGKKPAEGAA

Specific function: Member of the two-component regulatory system RBE_0312/RBE_0470 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=40.8695652173913, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790437, Length=116, Percent_Identity=37.9310344827586, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790299, Length=116, Percent_Identity=35.3448275862069, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787375, Length=129, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789809, Length=134, Percent_Identity=32.089552238806, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786784, Length=125, Percent_Identity=33.6, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786911, Length=126, Percent_Identity=31.7460317460317, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 24217; Mature: 24086

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDG
CEEEEEEECCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
VTLLKEWASQGQLTMPVIMMSGHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLAR
HHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
GAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQTTAAIPFDIPLREARDAFERA
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHHH
YFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVELGKKPAEGAA
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDG
EEEEEEECCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
VTLLKEWASQGQLTMPVIMMSGHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLAR
HHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
GAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQTTAAIPFDIPLREARDAFERA
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHHH
YFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVELGKKPAEGAA
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA