| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126453535
Identifier: 126453535
GI number: 126453535
Start: 3497062
End: 3498891
Strand: Reverse
Name: 126453535
Synonym: BURPS1106A_3590
Alternate gene names: NA
Gene position: 3498891-3497062 (Counterclockwise)
Preceding gene: 126454603
Following gene: 126454382
Centisome position: 87.73
GC content: 69.67
Gene sequence:
>1830_bases ATGAAGCCGATTTGCTACACGATCGTTCCGAAAGATCCCGCCGCGCACCTGTTCGAGGTGACGCTCACGCTCGCCGATCC GGACCCGGCGGGCCAGCGCTTCGCGCTGCCCGTATGGATTCCGGGCAGCTATATGGTGCGCGAGTTCGCGCGCAATATCG TGACGCTGCGTGCGTTCAACGAAGCGGGCCGCAAGCTGCGGATCGGCAAGCTCGACAAGCAGACCTGGCAGGCCGCGCCG GCGCCCGGGCCGATCACGCTGCGCTACGACGTCTACGCGTGGGACCTGTCGGTGCGCGCCGCGCACCTGGACGACACGGG CGGCTTCTTCAACGGCACGAGCGTGTTTCTCGCGCCGCTCGGCCGCGAGGATGCGCCGTGCGAGGTAATGATCGAGCGGC CGGCGGGCGACGCGTACCGGCGCTGGCGCGTCGCGACGGCGCTGCCGGAGGCGCGCGGCACGAAACGCTACGGCTTCGGC GCGTACCGCGCGGAGAATTACGACGAGCTGATCGATCATCCGGTCACGCTCGGCGAATTCGCGCTCGCGTCGTTCGACGC GCACGGCGTGCCGCACGACATCGCGATCGCGGGCCGCGTGACCGGGCTCGATCTCGAGCGGCTCGCGGCCGACCTGAAGC GGGTGTGCGAGGCGCAGATCGCGCTGTTCGAGCCGAAGACCAGGCGCGCGCCGATGTCGCGCTACGTGTTCATGACGCAG GCGGTCAGCGACGGCTACGGCGGGCTCGAGCATCGCGCGTCGACGGCGCTCGTCTGCAATCGCACCGATCTGCCGGTGAA GGGGCGCCCTGAGAAGACGGACGGCTATCGGACTTACCTCGGCCTGTGCAGCCACGAGTACTTCCATACATGGAACGTGA AGCGGATCAAGCCGGCCGCGTTCGCGCCGTACGATCTGTCGCAGGAGAATTACACGTCGCTGCTGTGGCTCTTCGAGGGC TTCACGTCGTACTACGACGACCTGATGCTCGCGCGCAGCGGCCTCATCTCGCAGGACGACTATTTCGCGCTCGTCGGCCG CACGATCGCCGGCGTGCAGCGCGGCGCCGGCCGGCTCAGGCAGAGCGTCGCCGAAAGCTCGTTCGATGCGTGGATCAAGT ATTACCGGCAGGACGAAAACGCGACGAACGCGATCGTCAGCTATTACACGAAGGGCTCGCTCGTCGCGCTCGCGTTCGAT CTGGCGATTCGCGCGCGCAGCCGCCACCGCAAATCGCTCGACGACGTGATGCGGCTTTTGTGGCAGCGCTTCGGGCGCGA CTTCTACCACGGCAAGCCGCAAGGCGTCGGCGAGGACGACGTGAAGGCGCTGATCGCCGAAGCGACGGGTGTCGATCTCG GCCGTCTTTTCGACGAAGCGGTGTCCGGCACGCGCGATCTGCCGCTCGCCGAACTCTTCGAGCCGTTCGGCGTGACGCTC GCGCCGGACGGGGGCGCGGGCGGCGCGGCCGATGCGCCCGCGAAGCCGACGCTCGGCGCGCGCACGCGCGGCGGCGCGGA ATGCACGCTCGCGGCCGTCTACGAAGGCGGCGCCGCGCATCGGGCCGGGCTGTCCGCGGGCGACGCGCTCGTCGCGATCG ACGGGCTGCGCGTGACGGGCTCGAACCTCGACGCGCTGCTCGCGCGCTACCGCGTCGGCGACAAGGTCGAGATCCACGCA TTCCGGCGCGACGAACTGCGCGTGGTGCAGCTCAAGCTCGACGGCCCGGACATCGCGCGCTACAAGCTGGCCGCTCAGCC GAAGCCCGCGGCCGCGCGCGCCCGTCGCGACGCGTGGCTCGGGCTGCCGGCGGCGCGCGGCGGTCGATAA
Upstream 100 bases:
>100_bases ACGCGGCGTTTCCTGCATCGCGAAGGAGGCGTCGGCGCGTAGCCGACGCCTCTTTTCGTATCCGCATCCCTACCCCGTTC CCGCCCGACCGATTCCGACG
Downstream 100 bases:
>100_bases TCGCGCCGAACCGGGCGCGGATTGTTTCGCTATTGCAACAATCCGTCACCCGGCCACCGCTTTTTCGCGGCGGCGGCGAT CCGCACAATGGCGTCACTCG
Product: PDZ domain-containing protein
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Glycyl Aminopeptidase Protein; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MKPICYTIVPKDPAAHLFEVTLTLADPDPAGQRFALPVWIPGSYMVREFARNIVTLRAFNEAGRKLRIGKLDKQTWQAAP APGPITLRYDVYAWDLSVRAAHLDDTGGFFNGTSVFLAPLGREDAPCEVMIERPAGDAYRRWRVATALPEARGTKRYGFG AYRAENYDELIDHPVTLGEFALASFDAHGVPHDIAIAGRVTGLDLERLAADLKRVCEAQIALFEPKTRRAPMSRYVFMTQ AVSDGYGGLEHRASTALVCNRTDLPVKGRPEKTDGYRTYLGLCSHEYFHTWNVKRIKPAAFAPYDLSQENYTSLLWLFEG FTSYYDDLMLARSGLISQDDYFALVGRTIAGVQRGAGRLRQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFD LAIRARSRHRKSLDDVMRLLWQRFGRDFYHGKPQGVGEDDVKALIAEATGVDLGRLFDEAVSGTRDLPLAELFEPFGVTL APDGGAGGAADAPAKPTLGARTRGGAECTLAAVYEGGAAHRAGLSAGDALVAIDGLRVTGSNLDALLARYRVGDKVEIHA FRRDELRVVQLKLDGPDIARYKLAAQPKPAAARARRDAWLGLPAARGGR
Sequences:
>Translated_609_residues MKPICYTIVPKDPAAHLFEVTLTLADPDPAGQRFALPVWIPGSYMVREFARNIVTLRAFNEAGRKLRIGKLDKQTWQAAP APGPITLRYDVYAWDLSVRAAHLDDTGGFFNGTSVFLAPLGREDAPCEVMIERPAGDAYRRWRVATALPEARGTKRYGFG AYRAENYDELIDHPVTLGEFALASFDAHGVPHDIAIAGRVTGLDLERLAADLKRVCEAQIALFEPKTRRAPMSRYVFMTQ AVSDGYGGLEHRASTALVCNRTDLPVKGRPEKTDGYRTYLGLCSHEYFHTWNVKRIKPAAFAPYDLSQENYTSLLWLFEG FTSYYDDLMLARSGLISQDDYFALVGRTIAGVQRGAGRLRQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFD LAIRARSRHRKSLDDVMRLLWQRFGRDFYHGKPQGVGEDDVKALIAEATGVDLGRLFDEAVSGTRDLPLAELFEPFGVTL APDGGAGGAADAPAKPTLGARTRGGAECTLAAVYEGGAAHRAGLSAGDALVAIDGLRVTGSNLDALLARYRVGDKVEIHA FRRDELRVVQLKLDGPDIARYKLAAQPKPAAARARRDAWLGLPAARGGR >Mature_609_residues MKPICYTIVPKDPAAHLFEVTLTLADPDPAGQRFALPVWIPGSYMVREFARNIVTLRAFNEAGRKLRIGKLDKQTWQAAP APGPITLRYDVYAWDLSVRAAHLDDTGGFFNGTSVFLAPLGREDAPCEVMIERPAGDAYRRWRVATALPEARGTKRYGFG AYRAENYDELIDHPVTLGEFALASFDAHGVPHDIAIAGRVTGLDLERLAADLKRVCEAQIALFEPKTRRAPMSRYVFMTQ AVSDGYGGLEHRASTALVCNRTDLPVKGRPEKTDGYRTYLGLCSHEYFHTWNVKRIKPAAFAPYDLSQENYTSLLWLFEG FTSYYDDLMLARSGLISQDDYFALVGRTIAGVQRGAGRLRQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFD LAIRARSRHRKSLDDVMRLLWQRFGRDFYHGKPQGVGEDDVKALIAEATGVDLGRLFDEAVSGTRDLPLAELFEPFGVTL APDGGAGGAADAPAKPTLGARTRGGAECTLAAVYEGGAAHRAGLSAGDALVAIDGLRVTGSNLDALLARYRVGDKVEIHA FRRDELRVVQLKLDGPDIARYKLAAQPKPAAARARRDAWLGLPAARGGR
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66922; Mature: 66922
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPICYTIVPKDPAAHLFEVTLTLADPDPAGQRFALPVWIPGSYMVREFARNIVTLRAFN CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHEEEEEHH EAGRKLRIGKLDKQTWQAAPAPGPITLRYDVYAWDLSVRAAHLDDTGGFFNGTSVFLAPL HCCCEEEECCCCHHHHCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEC GREDAPCEVMIERPAGDAYRRWRVATALPEARGTKRYGFGAYRAENYDELIDHPVTLGEF CCCCCCCEEEEECCCCHHHHHEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHH ALASFDAHGVPHDIAIAGRVTGLDLERLAADLKRVCEAQIALFEPKTRRAPMSRYVFMTQ HHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEH AVSDGYGGLEHRASTALVCNRTDLPVKGRPEKTDGYRTYLGLCSHEYFHTWNVKRIKPAA HHCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCEECCCC FAPYDLSQENYTSLLWLFEGFTSYYDDLMLARSGLISQDDYFALVGRTIAGVQRGAGRLR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH QSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRARSRHRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEHHHHHHHHHHHHHCCHHHHHHHH WQRFGRDFYHGKPQGVGEDDVKALIAEATGVDLGRLFDEAVSGTRDLPLAELFEPFGVTL HHHHCCHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEE APDGGAGGAADAPAKPTLGARTRGGAECTLAAVYEGGAAHRAGLSAGDALVAIDGLRVTG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCCCEEEEEECEEEEC SNLDALLARYRVGDKVEIHAFRRDELRVVQLKLDGPDIARYKLAAQPKPAAARARRDAWL CCHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHC GLPAARGGR CCCCCCCCC >Mature Secondary Structure MKPICYTIVPKDPAAHLFEVTLTLADPDPAGQRFALPVWIPGSYMVREFARNIVTLRAFN CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHEEEEEHH EAGRKLRIGKLDKQTWQAAPAPGPITLRYDVYAWDLSVRAAHLDDTGGFFNGTSVFLAPL HCCCEEEECCCCHHHHCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEC GREDAPCEVMIERPAGDAYRRWRVATALPEARGTKRYGFGAYRAENYDELIDHPVTLGEF CCCCCCCEEEEECCCCHHHHHEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHH ALASFDAHGVPHDIAIAGRVTGLDLERLAADLKRVCEAQIALFEPKTRRAPMSRYVFMTQ HHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEH AVSDGYGGLEHRASTALVCNRTDLPVKGRPEKTDGYRTYLGLCSHEYFHTWNVKRIKPAA HHCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCEECCCC FAPYDLSQENYTSLLWLFEGFTSYYDDLMLARSGLISQDDYFALVGRTIAGVQRGAGRLR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH QSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRARSRHRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEHHHHHHHHHHHHHCCHHHHHHHH WQRFGRDFYHGKPQGVGEDDVKALIAEATGVDLGRLFDEAVSGTRDLPLAELFEPFGVTL HHHHCCHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEE APDGGAGGAADAPAKPTLGARTRGGAECTLAAVYEGGAAHRAGLSAGDALVAIDGLRVTG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCCCEEEEEECEEEEC SNLDALLARYRVGDKVEIHAFRRDELRVVQLKLDGPDIARYKLAAQPKPAAARARRDAWL CCHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHC GLPAARGGR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA