| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is hsdM [C]
Identifier: 126453526
GI number: 126453526
Start: 88777
End: 91245
Strand: Direct
Name: hsdM [C]
Synonym: BURPS1106A_0097
Alternate gene names: 126453526
Gene position: 88777-91245 (Clockwise)
Preceding gene: 126455121
Following gene: 126452645
Centisome position: 2.23
GC content: 58.36
Gene sequence:
>2469_bases ATGCCCCTCACGCTTTCCCAGCTTGAGCGCCACCTCTTCAAGGCCGCTGACATCCTGCGCGGCAAGATGGACGCCTCGGA ATTCAAGGAATACATCTTCGGCATGCTGTTCTTGAAGCGCTGTTCGGACGTTTTCGACCAGCGGCGGGAACAGGTCATCC GCAATGAACTCGCGGCCGGCAAGTCCGAGTTCGAGGCCCAGACAAGTGCCGACCTGAAACGATGGTACGGCGAGTCGTTT TACGTCCCGCCTCGTTCGCGGTGGGAATACCTGATGAATGAGGCTCACAACGACGTCGGCGGATTTTTGAACCGCGCGCT CGGAGGTCTCGAGAACAACAACAGCAGCCTGAGCGAAGTGCTCGAGCACATCGACTTTTCGCGGAAGGTCGGGCAGGCGA AGATCCCCGACATCAAGCTCCGTCAGCTGATTACTCATTTCAGCCTGTATCGCCTGCGCAACGAGGACTTCGAGTTCCCC GACCTGCTCGGCGCGGCGTATGAGTATCTGATTAGGGAATTTGCGGATTCAGCTGGCAAAAAAGGCGGTGAGTTCTATAC CCCGCGGTCAGTTGTTCGCATGATGGTCCGCCTGCTGAAGCCGCAGCAGAACCATAGCATTTACGACCCCTGCGTCGGCT CGGGCGGTATGTTGATTCTCTCGAAGGAATACATCGATGAGCACGGGCAAGACGGCAGCCGCGCTGAGCTGTACGGGCAA GAAGCCAACGGCACGGTGTGGTCGATCGCCAAAATGAACATGCTCCTGCACGGTATTGCCACCGCCGACCTGCGGAATGA CGACACGTTGTCCGAGCCGCAGCACGTCGAAGGCGGGGAACTGATGCGTTTCGATCGGGTTCTGAGCAATCCACCGTTTT CGATTAACTGGGGAACCACCGACACTGACCGGACCGGGCAAACTGTATGGTCGCCCAAATTCCGCGCCGAACGATTCAAG TATGGCGAAGTAGCGCTCGGCAGCAAGAAGGCCGACCTGATGTTCCTGCAGCACATGGTCGCGGTACTGCGAGATGGCGG ACAACTCGCCACGGTGATGCCGCATGGCGTCCTGTTCCGCGGCGGTGAAGAGGGTGCAATCCGAAAGGCAATGATAGAGG CCGATCTGGTCGAAGCCGTGATCGGTCTGCCGGCCAATCTTTTTTACGGGACAGGCATCCCCGCGTGCATCCTGGTGCTG CGCCAGCGGCTCGGAAACGCGACGGGCAAGCCAGTCGGCCGGCAAGGCAAGGTGCTGTTCATCAATGCGGACCGCGAGTA TTTCGAAGGCCGGGCGCAGAACTATCTCCTGCCGGAGCACATCGAAAAAATTGTCAGCACGTTTGACGCGTTTGCGGAAG TACCGTGCTTCTCGGCGATCGTCAGCATCGCGACGCTGCGTGAAAATGACTACAACCTGAATATTCGCCTGTACGCCGAT AACGCGCCGCCGCCCGAGCCCCAAAACGTCCGGGCGCATCTGGTCGGCGGCATACCGAAGTCCGAGGTGAAATCGAAGGC GTCACTCTTTACTGCACACGGGCTCGACGTTGGCGCATTGCTGGTCAGTCGCGGGAACACGGGGAAGGACGCCGAGTACA TGGAGTTTCGCCCCGAGGTGGCCGATTATCAGTCGATAAAGACGCTGATCGAACGGCACGCCGGCGTCGTGGCCCGAGAA AGCTCACTGTGGGAAACCTTCAACGCATGGTGGAATGACCATAGCCCCCGCATCCGGGCATTGGCGACCGGGCATGGGTT TGTCGCCGTCCGCTCAGATCTCCTTGAGAGCTTCAGCGCAGCGCTGGAACCACTGGGTATGTTGGATCGCTTCGAGGTGC AGGGCATCATTGCGGGCTTCTGGGATAGCGCGAAATATGAGTTTCAGACGCTGATGGCTCGCGGCGCGAAGGGCGTTGTC GACGCGTGGCGCACCAGCGTTCTGACGGCGCTCGATGACGAAAAATCAAAGGATAACCCTCACGAACACAAGCTCGTGAA GTTCCTGATGGCCGATTTTATCGAAGAGCTTGCTGAGATGGATGCCAAGAAGGCTGAACTGGACGCGCGGATCAAGTCAG CGACGGAAGCAAATCCCGATTCCGACGAAGAGGAAGCCGGTAACGATTCTGAGCCGGCTGTTGATGATGAACAGATCAAT GAGTGGAAGCGTGAGCTGGCGAACGTAAAGAAGCAACTCAAAGCCAAAGAGCAGGGTTTCGTGCGGCGGCTAAACTCGGC CGTCGACGCGCTCGATGAGGCAAAGTGTGCGTCGCTGCTGCTAACGATCTTGCGTAATGACATGCACACCATCATTGAGC GGTATGTAGGCGTCCACCGCAAGCAGGTCGTTGCCGCATTCGAGAGCTGGTGGGACAAGTACCGGGTAACCCTGGTCGAG ATCGAAGACAAGCGTGATGCAGCGGCGAAGGCCGTGCAAGAGTTCTTGAGGGGGTTGGGGTATGTGTGA
Upstream 100 bases:
>100_bases GGTGCGGATCGACAGCCTTCGAGGCTCCGCTGCGCTAGAGCATCGAGGGAAATTGCGTACAATCTCGCCCACGTATCGCA ACAACTAGAATGAGCACTAC
Downstream 100 bases:
>100_bases GCCAGTTGTCGGGTTTCGTCCGCTCAGTGAGCTTGCAGACACGAACCCAGAAACCCTACCAGCAAACACGCCATCGCACT TTCGGTTTCGGTACATCGAC
Product: type I restriction-modification system M subunit
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 822; Mature: 821
Protein sequence:
>822_residues MPLTLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSEFEAQTSADLKRWYGESF YVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEHIDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFP DLLGAAYEYLIREFADSAGKKGGEFYTPRSVVRMMVRLLKPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGSRAELYGQ EANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELMRFDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFK YGEVALGSKKADLMFLQHMVAVLRDGGQLATVMPHGVLFRGGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPACILVL RQRLGNATGKPVGRQGKVLFINADREYFEGRAQNYLLPEHIEKIVSTFDAFAEVPCFSAIVSIATLRENDYNLNIRLYAD NAPPPEPQNVRAHLVGGIPKSEVKSKASLFTAHGLDVGALLVSRGNTGKDAEYMEFRPEVADYQSIKTLIERHAGVVARE SSLWETFNAWWNDHSPRIRALATGHGFVAVRSDLLESFSAALEPLGMLDRFEVQGIIAGFWDSAKYEFQTLMARGAKGVV DAWRTSVLTALDDEKSKDNPHEHKLVKFLMADFIEELAEMDAKKAELDARIKSATEANPDSDEEEAGNDSEPAVDDEQIN EWKRELANVKKQLKAKEQGFVRRLNSAVDALDEAKCASLLLTILRNDMHTIIERYVGVHRKQVVAAFESWWDKYRVTLVE IEDKRDAAAKAVQEFLRGLGYV
Sequences:
>Translated_822_residues MPLTLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSEFEAQTSADLKRWYGESF YVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEHIDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFP DLLGAAYEYLIREFADSAGKKGGEFYTPRSVVRMMVRLLKPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGSRAELYGQ EANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELMRFDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFK YGEVALGSKKADLMFLQHMVAVLRDGGQLATVMPHGVLFRGGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPACILVL RQRLGNATGKPVGRQGKVLFINADREYFEGRAQNYLLPEHIEKIVSTFDAFAEVPCFSAIVSIATLRENDYNLNIRLYAD NAPPPEPQNVRAHLVGGIPKSEVKSKASLFTAHGLDVGALLVSRGNTGKDAEYMEFRPEVADYQSIKTLIERHAGVVARE SSLWETFNAWWNDHSPRIRALATGHGFVAVRSDLLESFSAALEPLGMLDRFEVQGIIAGFWDSAKYEFQTLMARGAKGVV DAWRTSVLTALDDEKSKDNPHEHKLVKFLMADFIEELAEMDAKKAELDARIKSATEANPDSDEEEAGNDSEPAVDDEQIN EWKRELANVKKQLKAKEQGFVRRLNSAVDALDEAKCASLLLTILRNDMHTIIERYVGVHRKQVVAAFESWWDKYRVTLVE IEDKRDAAAKAVQEFLRGLGYV >Mature_821_residues PLTLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSEFEAQTSADLKRWYGESFY VPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEHIDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPD LLGAAYEYLIREFADSAGKKGGEFYTPRSVVRMMVRLLKPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGSRAELYGQE ANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELMRFDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFKY GEVALGSKKADLMFLQHMVAVLRDGGQLATVMPHGVLFRGGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPACILVLR QRLGNATGKPVGRQGKVLFINADREYFEGRAQNYLLPEHIEKIVSTFDAFAEVPCFSAIVSIATLRENDYNLNIRLYADN APPPEPQNVRAHLVGGIPKSEVKSKASLFTAHGLDVGALLVSRGNTGKDAEYMEFRPEVADYQSIKTLIERHAGVVARES SLWETFNAWWNDHSPRIRALATGHGFVAVRSDLLESFSAALEPLGMLDRFEVQGIIAGFWDSAKYEFQTLMARGAKGVVD AWRTSVLTALDDEKSKDNPHEHKLVKFLMADFIEELAEMDAKKAELDARIKSATEANPDSDEEEAGNDSEPAVDDEQINE WKRELANVKKQLKAKEQGFVRRLNSAVDALDEAKCASLLLTILRNDMHTIIERYVGVHRKQVVAAFESWWDKYRVTLVEI EDKRDAAAKAVQEFLRGLGYV
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=338, Percent_Identity=25.7396449704142, Blast_Score=105, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 92460; Mature: 92329
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLTLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAG CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KSEFEAQTSADLKRWYGESFYVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEV HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH LEHIDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPDLLGAAYEYLIREFADSAGK HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC KGGEFYTPRSVVRMMVRLLKPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGSRAELYGQ CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCHHHCCCC EANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELMRFDRVLSNPPFSINWGTT CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCC DTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAVLRDGGQLATVMPHGVLFR CCCCCCCCCCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE GGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPACILVLRQRLGNATGKPVGRQGKVLF CCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE INADREYFEGRAQNYLLPEHIEKIVSTFDAFAEVPCFSAIVSIATLRENDYNLNIRLYAD EECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEEEC NAPPPEPQNVRAHLVGGIPKSEVKSKASLFTAHGLDVGALLVSRGNTGKDAEYMEFRPEV CCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCHHHHCCCCH ADYQSIKTLIERHAGVVARESSLWETFNAWWNDHSPRIRALATGHGFVAVRSDLLESFSA HHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH ALEPLGMLDRFEVQGIIAGFWDSAKYEFQTLMARGAKGVVDAWRTSVLTALDDEKSKDNP HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC HEHKLVKFLMADFIEELAEMDAKKAELDARIKSATEANPDSDEEEAGNDSEPAVDDEQIN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHH EWKRELANVKKQLKAKEQGFVRRLNSAVDALDEAKCASLLLTILRNDMHTIIERYVGVHR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQVVAAFESWWDKYRVTLVEIEDKRDAAAKAVQEFLRGLGYV HHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PLTLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAG CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KSEFEAQTSADLKRWYGESFYVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEV HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH LEHIDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPDLLGAAYEYLIREFADSAGK HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC KGGEFYTPRSVVRMMVRLLKPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGSRAELYGQ CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCHHHCCCC EANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELMRFDRVLSNPPFSINWGTT CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCC DTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAVLRDGGQLATVMPHGVLFR CCCCCCCCCCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE GGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPACILVLRQRLGNATGKPVGRQGKVLF CCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE INADREYFEGRAQNYLLPEHIEKIVSTFDAFAEVPCFSAIVSIATLRENDYNLNIRLYAD EECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEEEC NAPPPEPQNVRAHLVGGIPKSEVKSKASLFTAHGLDVGALLVSRGNTGKDAEYMEFRPEV CCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCHHHHCCCCH ADYQSIKTLIERHAGVVARESSLWETFNAWWNDHSPRIRALATGHGFVAVRSDLLESFSA HHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH ALEPLGMLDRFEVQGIIAGFWDSAKYEFQTLMARGAKGVVDAWRTSVLTALDDEKSKDNP HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC HEHKLVKFLMADFIEELAEMDAKKAELDARIKSATEANPDSDEEEAGNDSEPAVDDEQIN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHH EWKRELANVKKQLKAKEQGFVRRLNSAVDALDEAKCASLLLTILRNDMHTIIERYVGVHR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQVVAAFESWWDKYRVTLVEIEDKRDAAAKAVQEFLRGLGYV HHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]