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The map label for this gene is sspB [H]

Identifier: 126453519

GI number: 126453519

Start: 3621298

End: 3621819

Strand: Reverse

Name: sspB [H]

Synonym: BURPS1106A_3703

Alternate gene names: 126453519

Gene position: 3621819-3621298 (Counterclockwise)

Preceding gene: 126452854

Following gene: 126454671

Centisome position: 90.81

GC content: 64.75

Gene sequence:

>522_bases
ATGCAAGAGATTTCCACGAAGCCGTATTTGCTGCGCGCGCTGTACGAATGGTGCACGGATAACGGATACACACCCCATAT
CGCGGTGCGGGTCGACAAGTCGACGCGCGTGCCGCGCCAGTTCGTGCGCGATGGGGAGATCGTGTTGAACATCAGCTTCG
AGGCGACGAGCCAGCTGCAGATGGGCAACGAATGGATCGAGTTCACCGCGCGGTTTTCGGGCAAGGCGCACAAGCTCGAG
GTGCCGGTTGCGAACGTGCTTGCGATCTACGCACGGGAGAACGGCCAGGGGATGGCGTTTCAGGTCGACGTTGCCGCGGA
GACGGGCGAGGCTGACGGTAGCGACGCGCTTGCTGTGGCAGAGGAAGGGGACGATGCGGGCGCGCGCCACGCTTCAGCCG
ACGGCGCAGCCGAGGCGGCGCCCGAGCCCGGTGACGCTGCGGAGGAGTTGCCGAAGTCCGATGGCGATGGCGACGGTGAT
GGGGCGAAAGGCAGCCGGCCTCGCCTCAAGATCGTGAAATGA

Upstream 100 bases:

>100_bases
GACGCCGTCCGAAAAGGTCATGCGTCGTTAAGCTGTATGTGACTGGGGAGCGGATGCGGCGGCATTGCGCCGCCGCATCC
GTTTCCGTTCGAGGATGGCG

Downstream 100 bases:

>100_bases
GGTAGAATTTCCGGCTCAACGCCGGCTTAGCTCATCTGGTAGAGCAGTTGATTTGTAATCATCAGGTGGCGGGTTCGAGT
CCTGCAGCCGGCACCAAACA

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQEISTKPYLLRALYEWCTDNGYTPHIAVRVDKSTRVPRQFVRDGEIVLNISFEATSQLQMGNEWIEFTARFSGKAHKLE
VPVANVLAIYARENGQGMAFQVDVAAETGEADGSDALAVAEEGDDAGARHASADGAAEAAPEPGDAAEELPKSDGDGDGD
GAKGSRPRLKIVK

Sequences:

>Translated_173_residues
MQEISTKPYLLRALYEWCTDNGYTPHIAVRVDKSTRVPRQFVRDGEIVLNISFEATSQLQMGNEWIEFTARFSGKAHKLE
VPVANVLAIYARENGQGMAFQVDVAAETGEADGSDALAVAEEGDDAGARHASADGAAEAAPEPGDAAEELPKSDGDGDGD
GAKGSRPRLKIVK
>Mature_173_residues
MQEISTKPYLLRALYEWCTDNGYTPHIAVRVDKSTRVPRQFVRDGEIVLNISFEATSQLQMGNEWIEFTARFSGKAHKLE
VPVANVLAIYARENGQGMAFQVDVAAETGEADGSDALAVAEEGDDAGARHASADGAAEAAPEPGDAAEELPKSDGDGDGD
GAKGSRPRLKIVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=105, Percent_Identity=48.5714285714286, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 18491; Mature: 18491

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEISTKPYLLRALYEWCTDNGYTPHIAVRVDKSTRVPRQFVRDGEIVLNISFEATSQLQ
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCCHH
MGNEWIEFTARFSGKAHKLEVPVANVLAIYARENGQGMAFQVDVAAETGEADGSDALAVA
CCCCEEEEEEECCCCEEEEECCHHHEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEE
EEGDDAGARHASADGAAEAAPEPGDAAEELPKSDGDGDGDGAKGSRPRLKIVK
ECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MQEISTKPYLLRALYEWCTDNGYTPHIAVRVDKSTRVPRQFVRDGEIVLNISFEATSQLQ
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCCHH
MGNEWIEFTARFSGKAHKLEVPVANVLAIYARENGQGMAFQVDVAAETGEADGSDALAVA
CCCCEEEEEEECCCCEEEEECCHHHEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEE
EEGDDAGARHASADGAAEAAPEPGDAAEELPKSDGDGDGDGAKGSRPRLKIVK
ECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]