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The map label for this gene is ydhM [C]

Identifier: 126453445

GI number: 126453445

Start: 3529004

End: 3529648

Strand: Direct

Name: ydhM [C]

Synonym: BURPS1106A_3628

Alternate gene names: 126453445

Gene position: 3529004-3529648 (Clockwise)

Preceding gene: 126454702

Following gene: 126453361

Centisome position: 88.48

GC content: 69.92

Gene sequence:

>645_bases
ATGGCCAATACCGTCGCCAAGACTGCCGCCAAGGCCGCCGCCAAATCGGCCGGCCGCCGCGCGCGCGGCACGCAGGTCGC
GGGTGCGCAGGCGCAGCAGCATCTGCTCCGCGCGGCCGAGGAGCTGTTCTATCAGGAGGGGGTTCGCGCAGTGGGCGTCG
ATGCGGTCGTCGAGCGCGCGGGCGTCAACAAGATGAGCCTCTATCGGCAGTTCGCGTCGAAGGACGAACTCGTGCTCGCG
TACCTCGAGCGGATGGATGCGTGCTTCTTCGAACGCTTCGACACGAGCGTCGCCAAGCATCCGGGCAAGCCGAAAGCGCA
ACTCGTCCAGTATTTCGACGACCTCGCGCAGCGCGCGTCGCAACCCGGCTATCGCGGCTGCCCGTTCGTCAACGTCGCCG
CCGAATTTCCGGATCTCGATCATCCCGCGCGGCGCGCGGTGGCCGCCAACAAGGATCGGCTGATGGCGCGGCTCGTCGCG
CTGACGGAGGCGGCGGGCGCGCGCGAGCCGCAGGCGCTCGCCGGCGCGCTCGCACTGCTGATCGAGGGCATTTATGCAGC
GAGCCAGACCTACCGGCCCGGCGCGTCTCCGATCGGCAGCGCGCCGGGCGTCGCGCGGCAGTTGATCGACGCGGCATGCG
CGTGA

Upstream 100 bases:

>100_bases
ACATGCGCCGATCTTTGTTACCGATCGGTCACAAGTTGTTGCGATCCTAGTGACCGATCGGTAACATGTCAAGCAGTCAA
TTTCGTAGTCGGGATCGAGC

Downstream 100 bases:

>100_bases
CGCGCTATCAGCCGGCGCGCGGCGGCAAGGGCACGGCGCATGCCGCGCCGACGCACGACGCACGACGCACGACGCACGAC
GCAGTTCGGCGGGAAAAGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; TetR Family Regulatory Protein; Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulator Protein; Tetr Family Transcriptional Regulator; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Transcription Regulator Protein; Transcription Regulator; TetR-Family Protein Transcriptional Regulator; Transcriptional Regulator TetR; Methionine And Cysteine Biosynthesis Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MANTVAKTAAKAAAKSAGRRARGTQVAGAQAQQHLLRAAEELFYQEGVRAVGVDAVVERAGVNKMSLYRQFASKDELVLA
YLERMDACFFERFDTSVAKHPGKPKAQLVQYFDDLAQRASQPGYRGCPFVNVAAEFPDLDHPARRAVAANKDRLMARLVA
LTEAAGAREPQALAGALALLIEGIYAASQTYRPGASPIGSAPGVARQLIDAACA

Sequences:

>Translated_214_residues
MANTVAKTAAKAAAKSAGRRARGTQVAGAQAQQHLLRAAEELFYQEGVRAVGVDAVVERAGVNKMSLYRQFASKDELVLA
YLERMDACFFERFDTSVAKHPGKPKAQLVQYFDDLAQRASQPGYRGCPFVNVAAEFPDLDHPARRAVAANKDRLMARLVA
LTEAAGAREPQALAGALALLIEGIYAASQTYRPGASPIGSAPGVARQLIDAACA
>Mature_213_residues
ANTVAKTAAKAAAKSAGRRARGTQVAGAQAQQHLLRAAEELFYQEGVRAVGVDAVVERAGVNKMSLYRQFASKDELVLAY
LERMDACFFERFDTSVAKHPGKPKAQLVQYFDDLAQRASQPGYRGCPFVNVAAEFPDLDHPARRAVAANKDRLMARLVAL
TEAAGAREPQALAGALALLIEGIYAASQTYRPGASPIGSAPGVARQLIDAACA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22788; Mature: 22657

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTVAKTAAKAAAKSAGRRARGTQVAGAQAQQHLLRAAEELFYQEGVRAVGVDAVVERA
CCCHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GVNKMSLYRQFASKDELVLAYLERMDACFFERFDTSVAKHPGKPKAQLVQYFDDLAQRAS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
QPGYRGCPFVNVAAEFPDLDHPARRAVAANKDRLMARLVALTEAAGAREPQALAGALALL
CCCCCCCCCEEHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IEGIYAASQTYRPGASPIGSAPGVARQLIDAACA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ANTVAKTAAKAAAKSAGRRARGTQVAGAQAQQHLLRAAEELFYQEGVRAVGVDAVVERA
CCHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GVNKMSLYRQFASKDELVLAYLERMDACFFERFDTSVAKHPGKPKAQLVQYFDDLAQRAS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
QPGYRGCPFVNVAAEFPDLDHPARRAVAANKDRLMARLVALTEAAGAREPQALAGALALL
CCCCCCCCCEEHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IEGIYAASQTYRPGASPIGSAPGVARQLIDAACA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA