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The map label for this gene is tse [H]

Identifier: 126453360

GI number: 126453360

Start: 3876733

End: 3878538

Strand: Reverse

Name: tse [H]

Synonym: BURPS1106A_3975

Alternate gene names: 126453360

Gene position: 3878538-3876733 (Counterclockwise)

Preceding gene: 126453794

Following gene: 126451564

Centisome position: 97.24

GC content: 68.77

Gene sequence:

>1806_bases
ATGCTCTCCTCGATCCGGTCCCGCATTCTCGTCGCGTGCCTCGCCATCGTCATCGGCTCGCTCGTCATCAACACGGCGCT
CAACTATTTCGTCGCCAACCGCTATAACCGCGAGTCCATCAGCCAGAACCTCAGCGCGGTGCTGACCGGCCACGAAGCCG
GCATCGCCGATTGGGTCGCGTCGAAGACGCAGATGATCGTGTCGGTCGAAGACGCCGCGATCTCGCCGGATCCGATTCCG
GCGCTCAAGCAGATCGCCGCCGCCGGCGGGTTCACCAATGTCTATGTCGGCTACGCGGACAAGACCGCGAAATTCTCCGA
TCCCACCGGTATTCCGCCCGACTACGATCCGACCGGCCGCCCGTGGTACAAGCAGGCCGCGCAGGCGGGCAAGCCGGTCG
TCACGCCGCCCTATGTCGACGTCGGCACGGGCAAGCTCGTCGTCGCGTTCGCCGCGCCGATCATGCGCGACGGCGCGCTG
AAGGGCGTCGTGTCCGGCGACGTCGCGATGGACAGCGTGATCGCGAACGTCAAGGCGATCCACCCGACGCCCGGCAGTTT
CGGGATGCTCGTCGACCGCAGCGGCCATATCGTCGCGCATGCCGATTCGAAGCTCACGCTCAAGCCCGTCACCGATCTCT
CCGACGATCTGAGCCTCGACGCGCTCGCCGCGGCGTCGGCCGACGAGAACGCCGCGCCGATCGACGCGCACGTCGCGGGC
GCGGCGAAGCTGATGCGCGCGCGCGCCGTGCCGGGCACCGACTGGCTGACCGTCGTCGCGCTCGACAAGTCCGATGCGAC
GGCCGGCATGCATTCGCTGCTGCTCGTCTCGATCGGCACGCTTGTCGCGCTTGCCGCCGTCGCCGCGCTGATCGTCGGCG
CGATCACGGGCGTCGCGTTTCGCGGGCTCGCGCGCATTCGCGACGCGATGGAATCGATCGGCTCCGGCACGGGCGATCTG
ACGCAGCGGCTGCCCGATAGCGGCCGCGACGAAGTGGCGCAGATCGCGCGCTCGTTCAACGCGTTCGTCAGCAAGCTGCA
GGAGGTGATGCGCGTGATCCGCGACGCGAGCGAATCGGTGCGGCATGCGGCGGGCGAGATCGCGTCGGGCAATCACGATC
TGTCGCGCCGCACGGAATCGGCGGCGGCGAGCCTGCAGCAGACGGCCGCGTCGATCGAGGAGATCACGTCGACGGTCACG
CAATCGGCAGGCGCCGCGCGCCAGGCGAACGACATCGCGACGAACGCGGCGAGCGTCGCGTCGCGCGGCGGCACGGTCGT
GTCCGACGTCGTGTCGACGATGCACGAGATCGAAGGCGCGTCCGGCAAGATCGCCGACATCATCGGCGTGATCGACGGCA
TCGCGTTCCAGACCAATATCCTCGCGTTGAACGCGGCCGTCGAGGCGGCGCGCGCGGGCGAGGAGGGGCGCGGCTTCGCG
GTGGTCGCGGGCGAGGTGCGCTCGCTCGCGCAGCGCAGCGCGCAGGCGGCGAAGGAAATCAAGGCGCTGATCGATTCGAG
CGTGACGAGCGTGTCGACGGGCGCCACGCTCGTCCAGCAGGCCGGGCAGACGATGAGCGACATCGTCGGCACGGTTTCGA
ACGTGACGACGATCATGCGCGAGATCTCGAATGCCGCCGACGAACAGACGCGCGGCATCCAGGAAGTGAATCGCGCGGTC
GCGCAGCTCGACGAGATGGTTCAGCAGAACGCGGCGCTCGTCGAGCAGTCGGCCGCGGCCGCCTCGGCGTTGCAGACTCA
GGCGGTCGAGCTCGCCGACGCGGTCGGGCAGTTCAAGGTCGCGTGA

Upstream 100 bases:

>100_bases
CCTAGAGCGAAAACACCAGACGTACAGCGTCCCGCGGGTCAAGTCGCGCGTTTGCGCAGCCGTAAACCAATAGGTTCGCT
CCACATCCATGTCGCCCTTC

Downstream 100 bases:

>100_bases
TCGGCGCGCCGATCACATATCGGTCACGCCTCGACCGTCGATCGCGCATCGGTCACGCACGGGCCGCGCCGCGCCCGAGC
CAATCGCTCAGCGCCTGCGT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MLSSIRSRILVACLAIVIGSLVINTALNYFVANRYNRESISQNLSAVLTGHEAGIADWVASKTQMIVSVEDAAISPDPIP
ALKQIAAAGGFTNVYVGYADKTAKFSDPTGIPPDYDPTGRPWYKQAAQAGKPVVTPPYVDVGTGKLVVAFAAPIMRDGAL
KGVVSGDVAMDSVIANVKAIHPTPGSFGMLVDRSGHIVAHADSKLTLKPVTDLSDDLSLDALAAASADENAAPIDAHVAG
AAKLMRARAVPGTDWLTVVALDKSDATAGMHSLLLVSIGTLVALAAVAALIVGAITGVAFRGLARIRDAMESIGSGTGDL
TQRLPDSGRDEVAQIARSFNAFVSKLQEVMRVIRDASESVRHAAGEIASGNHDLSRRTESAAASLQQTAASIEEITSTVT
QSAGAARQANDIATNAASVASRGGTVVSDVVSTMHEIEGASGKIADIIGVIDGIAFQTNILALNAAVEAARAGEEGRGFA
VVAGEVRSLAQRSAQAAKEIKALIDSSVTSVSTGATLVQQAGQTMSDIVGTVSNVTTIMREISNAADEQTRGIQEVNRAV
AQLDEMVQQNAALVEQSAAAASALQTQAVELADAVGQFKVA

Sequences:

>Translated_601_residues
MLSSIRSRILVACLAIVIGSLVINTALNYFVANRYNRESISQNLSAVLTGHEAGIADWVASKTQMIVSVEDAAISPDPIP
ALKQIAAAGGFTNVYVGYADKTAKFSDPTGIPPDYDPTGRPWYKQAAQAGKPVVTPPYVDVGTGKLVVAFAAPIMRDGAL
KGVVSGDVAMDSVIANVKAIHPTPGSFGMLVDRSGHIVAHADSKLTLKPVTDLSDDLSLDALAAASADENAAPIDAHVAG
AAKLMRARAVPGTDWLTVVALDKSDATAGMHSLLLVSIGTLVALAAVAALIVGAITGVAFRGLARIRDAMESIGSGTGDL
TQRLPDSGRDEVAQIARSFNAFVSKLQEVMRVIRDASESVRHAAGEIASGNHDLSRRTESAAASLQQTAASIEEITSTVT
QSAGAARQANDIATNAASVASRGGTVVSDVVSTMHEIEGASGKIADIIGVIDGIAFQTNILALNAAVEAARAGEEGRGFA
VVAGEVRSLAQRSAQAAKEIKALIDSSVTSVSTGATLVQQAGQTMSDIVGTVSNVTTIMREISNAADEQTRGIQEVNRAV
AQLDEMVQQNAALVEQSAAAASALQTQAVELADAVGQFKVA
>Mature_601_residues
MLSSIRSRILVACLAIVIGSLVINTALNYFVANRYNRESISQNLSAVLTGHEAGIADWVASKTQMIVSVEDAAISPDPIP
ALKQIAAAGGFTNVYVGYADKTAKFSDPTGIPPDYDPTGRPWYKQAAQAGKPVVTPPYVDVGTGKLVVAFAAPIMRDGAL
KGVVSGDVAMDSVIANVKAIHPTPGSFGMLVDRSGHIVAHADSKLTLKPVTDLSDDLSLDALAAASADENAAPIDAHVAG
AAKLMRARAVPGTDWLTVVALDKSDATAGMHSLLLVSIGTLVALAAVAALIVGAITGVAFRGLARIRDAMESIGSGTGDL
TQRLPDSGRDEVAQIARSFNAFVSKLQEVMRVIRDASESVRHAAGEIASGNHDLSRRTESAAASLQQTAASIEEITSTVT
QSAGAARQANDIATNAASVASRGGTVVSDVVSTMHEIEGASGKIADIIGVIDGIAFQTNILALNAAVEAARAGEEGRGFA
VVAGEVRSLAQRSAQAAKEIKALIDSSVTSVSTGATLVQQAGQTMSDIVGTVSNVTTIMREISNAADEQTRGIQEVNRAV
AQLDEMVQQNAALVEQSAAAASALQTQAVELADAVGQFKVA

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=337, Percent_Identity=51.6320474777448, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=57.0422535211268, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI1788194, Length=298, Percent_Identity=53.0201342281879, Blast_Score=268, Evalue=7e-73,
Organism=Escherichia coli, GI1787690, Length=327, Percent_Identity=48.3180428134557, Blast_Score=261, Evalue=8e-71,
Organism=Escherichia coli, GI1789453, Length=324, Percent_Identity=37.6543209876543, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 61818; Mature: 61818

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSIRSRILVACLAIVIGSLVINTALNYFVANRYNRESISQNLSAVLTGHEAGIADWVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
SKTQMIVSVEDAAISPDPIPALKQIAAAGGFTNVYVGYADKTAKFSDPTGIPPDYDPTGR
CCHHEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
PWYKQAAQAGKPVVTPPYVDVGTGKLVVAFAAPIMRDGALKGVVSGDVAMDSVIANVKAI
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHEE
HPTPGSFGMLVDRSGHIVAHADSKLTLKPVTDLSDDLSLDALAAASADENAAPIDAHVAG
CCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH
AAKLMRARAVPGTDWLTVVALDKSDATAGMHSLLLVSIGTLVALAAVAALIVGAITGVAF
HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLARIRDAMESIGSGTGDLTQRLPDSGRDEVAQIARSFNAFVSKLQEVMRVIRDASESV
HHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHAAGEIASGNHDLSRRTESAAASLQQTAASIEEITSTVTQSAGAARQANDIATNAASVA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SRGGTVVSDVVSTMHEIEGASGKIADIIGVIDGIAFQTNILALNAAVEAARAGEEGRGFA
HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
VVAGEVRSLAQRSAQAAKEIKALIDSSVTSVSTGATLVQQAGQTMSDIVGTVSNVTTIMR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EISNAADEQTRGIQEVNRAVAQLDEMVQQNAALVEQSAAAASALQTQAVELADAVGQFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure
MLSSIRSRILVACLAIVIGSLVINTALNYFVANRYNRESISQNLSAVLTGHEAGIADWVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
SKTQMIVSVEDAAISPDPIPALKQIAAAGGFTNVYVGYADKTAKFSDPTGIPPDYDPTGR
CCHHEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
PWYKQAAQAGKPVVTPPYVDVGTGKLVVAFAAPIMRDGALKGVVSGDVAMDSVIANVKAI
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHEE
HPTPGSFGMLVDRSGHIVAHADSKLTLKPVTDLSDDLSLDALAAASADENAAPIDAHVAG
CCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH
AAKLMRARAVPGTDWLTVVALDKSDATAGMHSLLLVSIGTLVALAAVAALIVGAITGVAF
HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLARIRDAMESIGSGTGDLTQRLPDSGRDEVAQIARSFNAFVSKLQEVMRVIRDASESV
HHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHAAGEIASGNHDLSRRTESAAASLQQTAASIEEITSTVTQSAGAARQANDIATNAASVA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SRGGTVVSDVVSTMHEIEGASGKIADIIGVIDGIAFQTNILALNAAVEAARAGEEGRGFA
HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
VVAGEVRSLAQRSAQAAKEIKALIDSSVTSVSTGATLVQQAGQTMSDIVGTVSNVTTIMR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EISNAADEQTRGIQEVNRAVAQLDEMVQQNAALVEQSAAAASALQTQAVELADAVGQFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]