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The map label for this gene is ntrY [H]

Identifier: 126453271

GI number: 126453271

Start: 157169

End: 159577

Strand: Direct

Name: ntrY [H]

Synonym: BURPS1106A_0167

Alternate gene names: 126453271

Gene position: 157169-159577 (Clockwise)

Preceding gene: 126452437

Following gene: 126453538

Centisome position: 3.94

GC content: 66.75

Gene sequence:

>2409_bases
ATGCGCGTCCGCCGCGCAACGAGCGGAAAGAGCCTGCTGATACGCGTGATCGTGTCGACTGTCGCGATCACGGCGCTTCT
GCTGCTCGTGCTGCTCGCGGCCGCAAGCGCGAACACCGAGTTCTTCGACCGCTACTACTCGTGGCTCTATTCGGCGAACA
TCATCGTCGCGCTCGTGTTCATGCTGGTCGTGCTCGGGCTCGTCGGGATGATCGTCGCGCGGCTGAGGAAGGGCAAGTTC
GGCACGCGGCTGCTCGCGAAGCTCGCGGTGTTCTTCACGCTCGTCGGCGTCGTGCCGGGCGGGATCATCTATATCGTGTC
GTATCAGTTCGTGTCGCGCAGCATCGAATCGTGGTTCGACGTGAACGTCGAGACGGCGCTCACCGCGGGCCTGAATCTCG
GCCGCGGGATGCTCGACACGTCGCTCGCGGACTTGCAGACGAAGGCGCGCCTGATGTCCGAGCAGCTCTCGAGCGCCGAC
GCCAACACGAACGGCACGACGCTCACGCTCCTGCGGCTGCGCGATCAGTTCGGCGTGCAGGATGCGACGATCGTCGAGCC
GGGCCGCGGCACGGGCGCGTCGCCCGATGTGCACATCATCGCGCAGGCGTCGGGCAACTTCGCCGCGCTGATTCCGGACG
ACATGCCGACGCCGCTGATGCTGAGCCAGGCGCGCGAGCACGGCGTGTTCGCGGCGATCGAAGGCGAGGTCGACGGCGAT
CCGCGCGCGCGCGGATCGAAGGGCGCGCTGCGCCTGCGCGTCGTGCAGCGCATTCCCGATTCGTCGACGTCGCTGCTGCA
GCCCGCCGAGCGCTTCCTGCAGCTCACGCAGCCGGTGTCGCCGACGCTCGCGCGCAACGCGGACGCCGTGCAGCGCGCGT
ATCGCGAATACCAGGAGAAATCGCTCGGCCGCAGCGGGCTGCGCAAGATGTACATCGGCACGCTCACGCTCGCGCTCTTT
CTCGCGACATTCATTGCGATGATGATCGCGCTCGCGCTCGGCAACCAGCTCGCGCGGCCGCTCTTCCTGCTCGCGCAGGG
CACGAAGGAAGTCGCGGAGGGCGACTACACGCCCAAGCGCGAGATCAAGACGCGCGACGAGCTCGGCTTTCTCACGCAGT
CGTTCAACGCGATGACGCGGCAGTTGTCGGAGGCGCGCCTCGCGGTCGAGAAGAACCGCGTCGCGCTCGAGCATTCGAAG
ACGTACCTCGAGAGCATTCTCGCGAACCTGACCGCGGGCGTGTTCGTGCTGGATCGCCAGTTTCGCCTGACGACCGCGAA
TCGCGGCGCCGAGCGAATCTTCCGCCAGCCGTTCAACTCGCTGATCGGTACGACGCTCGATCAGATCGGCGTCGTCGCGG
AGTTCGGCGCGATGGTGAGAAAGGCGTTCGCCGATCGCGAGGCGGCGGGCCGGGGCGGCGGCGAGGACCGCGGCCACTGG
CAGCAGCAGTTCGCCGTCGAGGTGCCGGGCGAGACCGAGCCGCTGACGCTGCTCGTGCGCGGCACGCGGCTCGTGTCGAC
GGCGGCGGCGCCCGGGCAGCCCGACGATCCGCAGACCTCCGGCTACGTCGTCGTGTTCGACGACATCTCCGATGTGATCT
CCGCGCAGCGTTCGGTCGCGTGGGGCGAGGTCGCGCGGCGGCTCGCGCACGAGATCAAGAATCCGCTCACGCCGATCCAG
CTCTCGGCCGAGCGCCTGCAGATGAAGCTTTCCGACAAGCTCTCGCAGCCCGACGCCGACGTGCTCAAGCGCGGTGCGAC
GACGATCGTCAATCAGGTGGCCGCGATGAAGCGCATGGTCGACGATTTTCGCGATTACGCGCGCACGCCGCCCGCGGTGC
TCGTCAACCTGCAACTGAACGATCTGGTGAGCGAAGTATTGACGCTTTACGGTGTCGGCGAGGGCAAGAGCACGATCGTC
GTCGAGCAGACGCCGCTGCCGGTGATCCGCGGCGATGCGACGCAACTGCGTCAGGTGATCCACAATCTGCTGCAAAACGC
GCAGGATTCGGTCGCCGACGTCGAGCATCCTCGTGTGTTGCTCGAAACCAAGACAGTAGAATATGGCGATCCCGACGCGA
ACGGCAAAACGCGCGTCGCGGTTCGGCTGACCGTCTCGGACAACGGTCCGGGTTTTCCGGCGCGCATCCTGACGCGCGCG
TTCGAGCCTTACGTGACGACGAAGGCGAAGGGCACGGGGCTTGGCCTCGCGACCGTGAAGAAGATCGTCGACGAGCATGG
CGCGCGGATCGACCTGCGCAATCGCATGCACGGCGATGTCGTGGAAGGCGCGCAAGTCTCGATCCTGTTCCTGCAGCTCG
CGGACGATACGGCGGGCGCCGGGGGCGGAACGAACGGCGGCACGGCACCCGCCAAGACAAGAGCAACTGTGCAGACAAAG
GCAGCGTAA

Upstream 100 bases:

>100_bases
CCCAAGCCGTTCCAGGTCGACGCGGTGAACAACCGCGACTGGAATCTCGTTTCCGATTGGAAGCGTTTCATTTTCACGGT
GGCCGAGCGTGCTAAGTAAA

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTCAGCGACGAAGGGCACGT
CGTCGACGTCGCGGAGAACG

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 802; Mature: 802

Protein sequence:

>802_residues
MRVRRATSGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKF
GTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLSSAD
ANTNGTTLTLLRLRDQFGVQDATIVEPGRGTGASPDVHIIAQASGNFAALIPDDMPTPLMLSQAREHGVFAAIEGEVDGD
PRARGSKGALRLRVVQRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTLALF
LATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSK
TYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGRGGGEDRGHW
QQQFAVEVPGETEPLTLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQ
LSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIV
VEQTPLPVIRGDATQLRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRA
FEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGDVVEGAQVSILFLQLADDTAGAGGGTNGGTAPAKTRATVQTK
AA

Sequences:

>Translated_802_residues
MRVRRATSGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKF
GTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLSSAD
ANTNGTTLTLLRLRDQFGVQDATIVEPGRGTGASPDVHIIAQASGNFAALIPDDMPTPLMLSQAREHGVFAAIEGEVDGD
PRARGSKGALRLRVVQRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTLALF
LATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSK
TYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGRGGGEDRGHW
QQQFAVEVPGETEPLTLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQ
LSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIV
VEQTPLPVIRGDATQLRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRA
FEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGDVVEGAQVSILFLQLADDTAGAGGGTNGGTAPAKTRATVQTK
AA
>Mature_802_residues
MRVRRATSGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKF
GTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLSSAD
ANTNGTTLTLLRLRDQFGVQDATIVEPGRGTGASPDVHIIAQASGNFAALIPDDMPTPLMLSQAREHGVFAAIEGEVDGD
PRARGSKGALRLRVVQRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTLALF
LATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSK
TYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGRGGGEDRGHW
QQQFAVEVPGETEPLTLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQ
LSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIV
VEQTPLPVIRGDATQLRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRA
FEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGDVVEGAQVSILFLQLADDTAGAGGGTNGGTAPAKTRATVQTK
AA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=405, Percent_Identity=25.679012345679, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1790300, Length=361, Percent_Identity=24.6537396121884, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86876; Mature: 86876

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRRATSGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MLVVLGLVGMIVARLRKGKFGTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC
VNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLSSADANTNGTTLTLLRLRDQFGVQ
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCC
DATIVEPGRGTGASPDVHIIAQASGNFAALIPDDMPTPLMLSQAREHGVFAAIEGEVDGD
CCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCC
PRARGSKGALRLRVVQRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEK
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
SLGRSGLRKMYIGTLTLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKR
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCH
EIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVLDRQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECC
FRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGRGGGEDRGHW
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
QQQFAVEVPGETEPLTLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVA
HHHEEEECCCCCCCEEEEEECCHHEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
WGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMV
HHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHH
DDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIVVEQTPLPVIRGDATQLRQVI
HHHHHHHCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHHHHHHH
HNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRA
HHHHHHHHHHHHHCCCCEEEEEECEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
FEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGDVVEGAQVSILFLQLADDTAGA
HCCCEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCC
GGGTNGGTAPAKTRATVQTKAA
CCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MRVRRATSGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MLVVLGLVGMIVARLRKGKFGTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC
VNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLSSADANTNGTTLTLLRLRDQFGVQ
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCC
DATIVEPGRGTGASPDVHIIAQASGNFAALIPDDMPTPLMLSQAREHGVFAAIEGEVDGD
CCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCC
PRARGSKGALRLRVVQRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEK
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
SLGRSGLRKMYIGTLTLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKR
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCH
EIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVLDRQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECC
FRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGRGGGEDRGHW
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
QQQFAVEVPGETEPLTLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVA
HHHEEEECCCCCCCEEEEEECCHHEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
WGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMV
HHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHH
DDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIVVEQTPLPVIRGDATQLRQVI
HHHHHHHCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHHHHHHH
HNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRA
HHHHHHHHHHHHHCCCCEEEEEECEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
FEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGDVVEGAQVSILFLQLADDTAGA
HCCCEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCC
GGGTNGGTAPAKTRATVQTKAA
CCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]