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The map label for this gene is hifC [H]

Identifier: 126453255

GI number: 126453255

Start: 1585914

End: 1588325

Strand: Direct

Name: hifC [H]

Synonym: BURPS1106A_1636

Alternate gene names: 126453255

Gene position: 1585914-1588325 (Clockwise)

Preceding gene: 126451789

Following gene: 126454966

Centisome position: 39.76

GC content: 71.14

Gene sequence:

>2412_bases
TTGAAGCGGTACAACGATGACAGAACGAGCGGACTGCCGCGGCGGCGCGCGGCGGCGTGGGCGGTGGGCATCGCATTCGC
GGCGGCGGGGCACGCGCGCGCGGGCGAGACGGCGACGCTCGCGGACAGCTTCGGCCGCGCGCTGCCGCCCGTGGGGGGCG
CGGCGGCGCACGGCACGCTGTATCTCGAGCTCGTCGTGAACGCGCTGTCGACGGGGCGCATCGTGCCGGTTCGCTATCGC
GACGGCATCTACTACGCGCGCGCGGGCGATCTCGCGCAGGCGTCGGTGCGCACGGGCGCGCAGCCCGATGCGCTCGTCGA
TCTGTCGAGGCTCGACGGCGTGCAGGTCGAATACGAGAGCGCCGAGCAGCGGCTGAAGCTCACCGTGCCGCCCGACTGGC
TGCCGCGCCAGACGCTCGGTTCGCCGCGGCTGTACGACCGCACGCCCGCGGCCGTCAGCTTCGGGCTCCTGTTCAATTAC
GACGTGTATGCGAATTCGCCGACGCTCGGCACGAGCTACACGTCCGCATGGACCGAGCAGCGGCTGTTCGACCGGTGGGG
CACCGTGACGAACACGGGCGTCTACCGGCGCGATTACGGTGGCGGCGCCGGCGGCGTCGGGAGCAACCGCTATCTGCGCT
ACGACACGTTCTGGCGCTATTCGGACCAGGACCGGCTGCGCACGTACACCGCGGGCGACGTGATCACGGGCGCGCTGTCG
TGGTCGAGCGCCGTGCGCTTGGGGGGCGTGTCCGTCGAGCGCGATTTCAAGGTGCGGCCCGACATCGTCACCTATCCGCT
GCCGCAGTTCTCGGGCCAGGCCGCGGTGCCCACCGCGGTCGATCTGTTCATCAACGGCAGCAAGACGACGACGGGGCAGG
TGAATCCCGGCCCGTTCACGATGAACAACGTGCCGTTCATCAACGGCGCCGGCGAGGCGACCGTCGTCACGACCGACGCG
CTCGGCCGTCAGGTGGCGACGACGATTCCGTTCTACGTCGCGAACACGCTGCTGCAAAAAGGGCTCTCCGATTATTCGCT
GTCGGCGGGCGCGATGCGGCGCGACTACGGGATCCGCTCGTTCTCGTACGGCAAGTTCGCGGCGTCGGGCACCGCGCGTC
ACGGCCTGACCGATTACCTGACGCTCGAGGGCCACGTGGAGGGCGGCGAGCGCTTCGCGCTCGGCGGGCTCGGGTTCGAC
CTCGGCATCGGCATGTTCGGCGTGCTCGGCGTCGCGGCGACGCAGAGCCGCCTCGCCGGTGCGTCGGGCCGGCAATACGC
GTTCGGCTACAGCTACGCGTCGCAGCGGTTCAGCGTGTCGCTGCAGCGCATCCAGCGCACGAACGGGTTTCGCGACCTGT
CGGTGTACGACCTGCCGGCGAACGTCGCGTACCGGCTCGTGCGCAGCAGCACGCAGGCGACGGGCGCGCTCAATCTCGGC
GCGCTCGGCGGCACGCTCGGCGCTGGCTACTTCGATGTGCGCGGCGCGGACGGCGCGCGCACGCGGATCGCGAACCTGTC
GTATACGCGGCCGCTATGGCGGCGCGCGACGCTCTACGCATCGGTCAACAAGACGGTCGGCGAGCACGGCGTGGCCGCGC
AACTTCAACTGATCGTGCCGCTCGGCGAGCCGGGCGTCGTGACGGGCGCGCTCGCGCGCGACGCGAACAACAGTTTCAGC
GAGCGCGTGCAGTACAGCCGCAGCGTGCCGAGCGACGGCGGCCTCGGCTGGAATCTCGCGTACGCGGGCGGCGGCTCGCA
TTATCAGCAGGCGGATGCGACGTGGCGCAACCGCTACTTCCAGGCGCAGGGCGGCGTGTACGGCTACGGCGCGGGGCGCG
GCTACGCGCGCTGGGGCGAGGTGCAGGGCTCGGTCGTCGTGATGGACGGCGCGGTGCTGCCCGCGAACCGTGTCGACGAT
GCGTTCGTGCTGATCGATACGCAGGGCCGCGGGGGCGTGCCGGTGCGCTACGAGAATCAGCTCGTCGGCAAGACCGACGG
CGGCGGCCACCTGCTCGTGCCGTGGGCGCCGTCGTATTACGCGGGCAAGTACGAGATCGATCCGCTCGACCTGCCGAGCA
ACGTGCGCGTGCCGATCGTCGAGCGCCGCGTCGCAGTGCGCGACCACGGCGGTGCGCTCGTCACGTTCCCGATCCGCAGG
ATCGTCTGCGCGCAGATCGCGCTCGTCGACGCGGCGGGCCGGCCGGTCGCCATCGGCTCGCGCGTGCTGCACGAGGAGAG
CGGCGAGACCGCGCTCGTCGGCTGGCAGGGCGAGACCTATCTCGAAGGCTTGTCCGCGCTCAACCACCTGCGCGTGCGGA
CGCCCGACGGCCGCACCTGCCGCGCGACGTTCGCAGCCGACGTCGACGCGGCGCAGATGAGCCGCGTCGGCCCGCTCGCG
TGCGGCGAATAA

Upstream 100 bases:

>100_bases
TCAACGGTGTGGCCGATCTCGCAATCGACGTGGACGGCGCCGCTTCGAATCGGTAATCCGCATCACGACACAAGCGACAA
TGTCGCGACGGGGAAATGCC

Downstream 100 bases:

>100_bases
CGACAGGATTCCTCGATGACGCCATTCCGACTATTCTTCGTGCGCATCGCGGCGACGCTCGCGCTCGGTCTCTTTTCGGC
GCTGCATGCGCACGCGACGT

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 803; Mature: 803

Protein sequence:

>803_residues
MKRYNDDRTSGLPRRRAAAWAVGIAFAAAGHARAGETATLADSFGRALPPVGGAAAHGTLYLELVVNALSTGRIVPVRYR
DGIYYARAGDLAQASVRTGAQPDALVDLSRLDGVQVEYESAEQRLKLTVPPDWLPRQTLGSPRLYDRTPAAVSFGLLFNY
DVYANSPTLGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRYSDQDRLRTYTAGDVITGALS
WSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTAVDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDA
LGRQVATTIPFYVANTLLQKGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGFD
LGIGMFGVLGVAATQSRLAGASGRQYAFGYSYASQRFSVSLQRIQRTNGFRDLSVYDLPANVAYRLVRSSTQATGALNLG
ALGGTLGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIVPLGEPGVVTGALARDANNSFS
ERVQYSRSVPSDGGLGWNLAYAGGGSHYQQADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDD
AFVLIDTQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAVRDHGGALVTFPIRR
IVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSALNHLRVRTPDGRTCRATFAADVDAAQMSRVGPLA
CGE

Sequences:

>Translated_803_residues
MKRYNDDRTSGLPRRRAAAWAVGIAFAAAGHARAGETATLADSFGRALPPVGGAAAHGTLYLELVVNALSTGRIVPVRYR
DGIYYARAGDLAQASVRTGAQPDALVDLSRLDGVQVEYESAEQRLKLTVPPDWLPRQTLGSPRLYDRTPAAVSFGLLFNY
DVYANSPTLGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRYSDQDRLRTYTAGDVITGALS
WSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTAVDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDA
LGRQVATTIPFYVANTLLQKGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGFD
LGIGMFGVLGVAATQSRLAGASGRQYAFGYSYASQRFSVSLQRIQRTNGFRDLSVYDLPANVAYRLVRSSTQATGALNLG
ALGGTLGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIVPLGEPGVVTGALARDANNSFS
ERVQYSRSVPSDGGLGWNLAYAGGGSHYQQADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDD
AFVLIDTQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAVRDHGGALVTFPIRR
IVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSALNHLRVRTPDGRTCRATFAADVDAAQMSRVGPLA
CGE
>Mature_803_residues
MKRYNDDRTSGLPRRRAAAWAVGIAFAAAGHARAGETATLADSFGRALPPVGGAAAHGTLYLELVVNALSTGRIVPVRYR
DGIYYARAGDLAQASVRTGAQPDALVDLSRLDGVQVEYESAEQRLKLTVPPDWLPRQTLGSPRLYDRTPAAVSFGLLFNY
DVYANSPTLGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRYSDQDRLRTYTAGDVITGALS
WSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTAVDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDA
LGRQVATTIPFYVANTLLQKGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGFD
LGIGMFGVLGVAATQSRLAGASGRQYAFGYSYASQRFSVSLQRIQRTNGFRDLSVYDLPANVAYRLVRSSTQATGALNLG
ALGGTLGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIVPLGEPGVVTGALARDANNSFS
ERVQYSRSVPSDGGLGWNLAYAGGGSHYQQADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDD
AFVLIDTQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAVRDHGGALVTFPIRR
IVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSALNHLRVRTPDGRTCRATFAADVDAAQMSRVGPLA
CGE

Specific function: Essential for piliation [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=764, Percent_Identity=23.0366492146597, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1786744, Length=593, Percent_Identity=25.2951096121417, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1789533, Length=698, Percent_Identity=22.7793696275072, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 86033; Mature: 86033

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYNDDRTSGLPRRRAAAWAVGIAFAAAGHARAGETATLADSFGRALPPVGGAAAHGTL
CCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCE
YLELVVNALSTGRIVPVRYRDGIYYARAGDLAQASVRTGAQPDALVDLSRLDGVQVEYES
EEEHHHHHHCCCCEEEEEEECCEEEEECCCCHHHHHHCCCCCHHEEEHHHCCCEEEEECC
AEQRLKLTVPPDWLPRQTLGSPRLYDRTPAAVSFGLLFNYDVYANSPTLGTSYTSAWTEQ
CCCEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHH
RLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRYSDQDRLRTYTAGDVITGALS
HHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHEEEECCCCEEEECC
WSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTAVDLFINGSKTTTGQVNPGPFT
CCCCEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEE
MNNVPFINGAGEATVVTTDALGRQVATTIPFYVANTLLQKGLSDYSLSAGAMRRDYGIRS
ECCCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCC
FSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGFDLGIGMFGVLGVAATQSRLAG
CCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
ASGRQYAFGYSYASQRFSVSLQRIQRTNGFRDLSVYDLPANVAYRLVRSSTQATGALNLG
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEC
ALGGTLGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIVP
CCCCCCCCCEEEEECCCCCCEEEECCCCCCCHHHHEEEEEEHHHHHCCCCCEEEEEEEEE
LGEPGVVTGALARDANNSFSERVQYSRSVPSDGGLGWNLAYAGGGSHYQQADATWRNRYF
CCCCCEEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHCCCHHHHCEE
QAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDDAFVLIDTQGRGGVPVRYENQ
EECCCEEEECCCCCCCCCCCCCCCEEEEECEECCCCCCCCEEEEEECCCCCCCCEEECCE
LVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAVRDHGGALVTFPIRR
EEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCEEECCEEEEECCCCEEEEHHHHH
IVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSALNHLRVRTPDGRTC
HHHHHHEEEECCCCCEEECHHHHHCCCCCEEEEECCCCHHHHHHHHHHHEEEECCCCCEE
RATFAADVDAAQMSRVGPLACGE
EEEEECCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MKRYNDDRTSGLPRRRAAAWAVGIAFAAAGHARAGETATLADSFGRALPPVGGAAAHGTL
CCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCE
YLELVVNALSTGRIVPVRYRDGIYYARAGDLAQASVRTGAQPDALVDLSRLDGVQVEYES
EEEHHHHHHCCCCEEEEEEECCEEEEECCCCHHHHHHCCCCCHHEEEHHHCCCEEEEECC
AEQRLKLTVPPDWLPRQTLGSPRLYDRTPAAVSFGLLFNYDVYANSPTLGTSYTSAWTEQ
CCCEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHH
RLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRYSDQDRLRTYTAGDVITGALS
HHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHEEEECCCCEEEECC
WSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTAVDLFINGSKTTTGQVNPGPFT
CCCCEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEE
MNNVPFINGAGEATVVTTDALGRQVATTIPFYVANTLLQKGLSDYSLSAGAMRRDYGIRS
ECCCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCC
FSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGFDLGIGMFGVLGVAATQSRLAG
CCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
ASGRQYAFGYSYASQRFSVSLQRIQRTNGFRDLSVYDLPANVAYRLVRSSTQATGALNLG
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEC
ALGGTLGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIVP
CCCCCCCCCEEEEECCCCCCEEEECCCCCCCHHHHEEEEEEHHHHHCCCCCEEEEEEEEE
LGEPGVVTGALARDANNSFSERVQYSRSVPSDGGLGWNLAYAGGGSHYQQADATWRNRYF
CCCCCEEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHCCCHHHHCEE
QAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDDAFVLIDTQGRGGVPVRYENQ
EECCCEEEECCCCCCCCCCCCCCCEEEEECEECCCCCCCCEEEEEECCCCCCCCEEECCE
LVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAVRDHGGALVTFPIRR
EEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCEEECCEEEEECCCCEEEEHHHHH
IVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSALNHLRVRTPDGRTC
HHHHHHEEEECCCCCEEECHHHHHCCCCCEEEEECCCCHHHHHHHHHHHEEEECCCCCEE
RATFAADVDAAQMSRVGPLACGE
EEEEECCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7905461 [H]