Click here to switch to the map view.

The map label for this gene is tctD [H]

Identifier: 126453172

GI number: 126453172

Start: 3981658

End: 3982350

Strand: Direct

Name: tctD [H]

Synonym: BURPS1106A_4078

Alternate gene names: 126453172

Gene position: 3981658-3982350 (Clockwise)

Preceding gene: 126455335

Following gene: 126454842

Centisome position: 99.83

GC content: 65.66

Gene sequence:

>693_bases
ATGCGACTCCTTCTGATCGAAGACGACCGCCCCATCGCACGCGGCATTCAAAGCAGCCTCGAACAAGCCGGCTTCACGGT
CGACATGGTTCATGACGGCATCTTTGCCGAGCAGGCGCTCGCGCAAAACCGCCACGAGCTCGTGATCCTCGACCTCGGCC
TGCCCGGCATCGACGGCATGACGCTGCTGTCGCGCTTTCGCCAGACCAACCGCCACACGCCCGTCATCGTGCTGACCGCG
CGCGACGAACTGAACGATCGCGTACAGGGCCTCAATTCGGGCGCCGACGACTACATGCTCAAGCCGTTCGAGCCCGCCGA
GCTCGAGGCGCGAATTCGCGCGGTGATGCGCCGCAGCGGCCCGCACAGCGACATGCCGCGCCCGGAAGTATCGCTCGGCG
GCGTGCGCCTGTCGGGCGTCGATCGTCGCATCTTCAACGACGACAAGCCGCTCGAGCTCTCGCCGCGCGAATTCGCGGTG
CTCGAGATGCTGCTGCTGCGTCACGGCCGCGTCGTCAGCAAGGCGCAACTGCAGGATCACCTGACGCACTTCGGCGGCGA
TCTCGGCGATACCGCGATCGAAGTCTACGTGCACCGGGTGCGCAAGAAGCTCGAGCAGTGCCGCGTCGAGATCGTCACGG
TGCGCGGCTTCGGCTATCTGCTGCAGGAAATTCGCCAGACCGCGAGCGTCTGA

Upstream 100 bases:

>100_bases
CCGTCCTGCTTGCCGCCGGGCTTCCGACGTTTTTCGTGGAAACGGCGTCGTGCTGTCCCGCGTGCCTGAACCGCCAACCC
ATTGTACTTGAGCGAATCTC

Downstream 100 bases:

>100_bases
TAGCCCGACGGTCTGACGCCTTGCGTGCGGCGCGCCGCAGCCGCGCGCGCGGCATGCTTGCCCTGCGCCGCTTCGCGAAG
CGGCGCTTATTCTTTTCTTT

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGMTLLSRFRQTNRHTPVIVLTA
RDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMRRSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAV
LEMLLLRHGRVVSKAQLQDHLTHFGGDLGDTAIEVYVHRVRKKLEQCRVEIVTVRGFGYLLQEIRQTASV

Sequences:

>Translated_230_residues
MRLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGMTLLSRFRQTNRHTPVIVLTA
RDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMRRSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAV
LEMLLLRHGRVVSKAQLQDHLTHFGGDLGDTAIEVYVHRVRKKLEQCRVEIVTVRGFGYLLQEIRQTASV
>Mature_230_residues
MRLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGMTLLSRFRQTNRHTPVIVLTA
RDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMRRSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAV
LEMLLLRHGRVVSKAQLQDHLTHFGGDLGDTAIEVYVHRVRKKLEQCRVEIVTVRGFGYLLQEIRQTASV

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=38.4615384615385, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=41.7040358744395, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=35.0877192982456, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=38.5650224215247, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=31.6964285714286, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787375, Length=224, Percent_Identity=34.8214285714286, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=35.8744394618834, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.4801762114537, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786911, Length=229, Percent_Identity=34.061135371179, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=31.6964285714286, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367329, Length=235, Percent_Identity=36.5957446808511, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=29.2035398230088, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=27.4336283185841, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=28.1385281385281, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790299, Length=102, Percent_Identity=32.3529411764706, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=31.7757009345794, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788713, Length=101, Percent_Identity=31.6831683168317, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788191, Length=123, Percent_Identity=27.6422764227642, Blast_Score=61, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=101, Percent_Identity=34.6534653465347, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25948; Mature: 25948

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGM
CEEEEEECCCHHHHHHHHHHHHHCCEEEHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHH
TLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMRRSG
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQLQDH
CCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LTHFGGDLGDTAIEVYVHRVRKKLEQCRVEIVTVRGFGYLLQEIRQTASV
HHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGM
CEEEEEECCCHHHHHHHHHHHHHCCEEEHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHH
TLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMRRSG
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQLQDH
CCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LTHFGGDLGDTAIEVYVHRVRKKLEQCRVEIVTVRGFGYLLQEIRQTASV
HHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]