Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 126452831

GI number: 126452831

Start: 2229174

End: 2230379

Strand: Reverse

Name: yfdE [H]

Synonym: BURPS1106A_2240

Alternate gene names: 126452831

Gene position: 2230379-2229174 (Counterclockwise)

Preceding gene: 126452036

Following gene: 126451735

Centisome position: 55.92

GC content: 69.65

Gene sequence:

>1206_bases
ATGAGCGCAACCCCCGGCCCGCTCGCGGGCGTCAAGGTGCTCGAACTCGGCACGCTGATCGCCGGCCCGTTCGCCGCGCG
CCTGCTCGCCGAGTTCGGTGCGCAAGTCATCAAGATCGAAGATCCGAATGGCGGCGATCCGCTGCGCAAGTGGCGCAAGC
TGTATCCGGAGGCGGGCGGCACGTCGCTGTGGTGGGCGGTGCAGGCACGCAACAAGAAATCGGTGACGATCAACCTGAAG
TCCGACGAGGGCAAGGAGATCGTGCGCCGCTTGGCGCGCGACGCCGACATCGTCGTCGAGAACTTTCGCCCCGGGCTGCT
CGAGAAGCTCGGCCTTGGCTACGATGTGCTGTCGGCCGACAATCCGGGCCTCGTGATGGTGCGCCTGTCCGGCTACGGGC
AGACCGGCCCGTACCGCGACCGTCCCGGCTTCGGCGCGATCGCCGAATCGATGGGCGGGCTGCGCCACATCACCGGCTAC
CCCGAGCTGCCGCCGCCGCGCATCGGCATTTCGATCGGCGATTCGATCGCGGCGCTGCACGGCGTGATCGGCGCGCTGAT
GGCGCTGCACCATCGCAACGTGAACGGCGGCGCGGGGCAGGTCGTCGACGTCGCGCTGTACGAGGCCGTCTTCAACATGA
TGGAAAGCGTCGTGCCGGAGTACGGCGTCTATGGGCTCGTGCGCGAGCGCACGGGCGCGTCGCTGCCGGGCATCGTGCCG
TCGAACACGTATCCGTGCCGCGACGGCAGCGTCGTGATCGGCGGCAACAGCGATCCGATCTTCAAGCGCCTGATGAAGGC
GATCGGGCGCGACGATCTCGCCGACGATCCGGCGCTCGCGCACAACGACGGCCGCGTGCCGCGCACGGGGGAGATCGACG
CGGCGATCGGCGCGTGGCTCGCCGAGCGCACGATCGACGATGCGCTCGCGGTGCTGAACGCGGCCGACGTGCCGGCGTCG
CGCATCTACAGCGTCGCCGACATGTTCGACGATCCGCAGTTCGTCGCGCGTCAGATGATCCAGCGTTTCAAACTCGCCGA
CGGCGCGCAGATCCCGCTGCCGAACGTGACGCCGAAGCTGTCCGGCACGCCGGGCGAAACGCGCTGGCTCGGGCCGGCGC
TCGGCGAGCACACGGACGAGGTGCTCGGCACGCTGGGCTACGACGCGCCGGCGATCGCCGCGCTGCGCGCAAGGCGCGCG
ATCTGA

Upstream 100 bases:

>100_bases
GCGCGCGATGCTCGACCGGCGCACGCTTTAGCCGGCCGCGCGCCGGCGCCGCGCGGCCGGCTCGCGCCGCGCGTCCCGTT
CAACGATCCAAGGAAGCGAC

Downstream 100 bases:

>100_bases
GCGCCGAGGGCCGCGCGGCATGCGTTTGCGCGCCGTCGCGCGCGGCGCGCAAAGCGCTCCGGGCTGTCGCTCTCGCGCAA
TCTTTCCTCGGTTACAATCG

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWAVQARNKKSVTINLK
SDEGKEIVRRLARDADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
SNTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADDPALAHNDGRVPRTGEIDAAIGAWLAERTIDDALAVLNAADVPAS
RIYSVADMFDDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGTLGYDAPAIAALRARRA
I

Sequences:

>Translated_401_residues
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWAVQARNKKSVTINLK
SDEGKEIVRRLARDADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
SNTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADDPALAHNDGRVPRTGEIDAAIGAWLAERTIDDALAVLNAADVPAS
RIYSVADMFDDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGTLGYDAPAIAALRARRA
I
>Mature_400_residues
SATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWAVQARNKKSVTINLKS
DEGKEIVRRLARDADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYP
ELPPPRIGISIGDSIAALHGVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVPS
NTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADDPALAHNDGRVPRTGEIDAAIGAWLAERTIDDALAVLNAADVPASR
IYSVADMFDDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGTLGYDAPAIAALRARRAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=390, Percent_Identity=31.025641025641, Blast_Score=195, Evalue=6e-50,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=32.4159021406728, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI300863126, Length=390, Percent_Identity=29.7435897435897, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=28.1345565749235, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=26.5, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=26.5, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=30, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=30, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=36.6412213740458, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.8778625954198, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=31.496062992126, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=30, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=29.1044776119403, Blast_Score=154, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=27.8592375366569, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=274, Percent_Identity=28.4671532846715, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=32.5757575757576, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24585488, Length=372, Percent_Identity=29.0322580645161, Blast_Score=111, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42704; Mature: 42573

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNGGDPLRKWRKLYPEAGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCC
TSLWWAVQARNKKSVTINLKSDEGKEIVRRLARDADIVVENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
SNTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADDPALAHNDGRVPRTGEIDAAIGAWL
CCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AERTIDDALAVLNAADVPASRIYSVADMFDDPQFVARQMIQRFKLADGAQIPLPNVTPKL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGTPGETRWLGPALGEHTDEVLGTLGYDAPAIAALRARRAI
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SATPGPLAGVKVLELGTLIAGPFAARLLAEFGAQVIKIEDPNGGDPLRKWRKLYPEAGG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCC
TSLWWAVQARNKKSVTINLKSDEGKEIVRRLARDADIVVENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRNVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
SNTYPCRDGSVVIGGNSDPIFKRLMKAIGRDDLADDPALAHNDGRVPRTGEIDAAIGAWL
CCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AERTIDDALAVLNAADVPASRIYSVADMFDDPQFVARQMIQRFKLADGAQIPLPNVTPKL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGTPGETRWLGPALGEHTDEVLGTLGYDAPAIAALRARRAI
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]